Anastrepha obliqua (West Indian fruit fly): 129248597
Help
Entry
129248597 CDS
T09777
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq04512
ECM-receptor interaction
aoq04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129248597
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
129248597
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aoq04147
]
129248597
00536 Glycosaminoglycan binding proteins [BR:
aoq00536
]
129248597
Exosome [BR:
aoq04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129248597
Glycosaminoglycan binding proteins [BR:
aoq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129248597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129248597
NCBI-ProteinID:
XP_054744189
LinkDB
All DBs
Position
5:complement(95572096..95585748)
Genome browser
AA seq
1780 aa
AA seq
DB search
MMEPHWKRLIFAATIAGALLGANAQFWKNTDTGAIYNPPSHYRDESTPPRSPIDDSYAII
ETVTTNRQGPPRNCTSGTVGCIPKCFAEKGNRGFPGEAGPPGPKGMPGYPGPEGPPGDKG
QKGDPGPLGPRGYKGERGVPGIPGMNGVPGVQGISGNPGSPGSPGKDGCDGQDGIPGLQG
LSGMAGPRGYPGQPGVKGEKGEPAKENGDYAKGEKGEPGFAGRSGNPGPEGLQGPKGDRG
DTGQYGPPGPRGERGLKGDKGAPCFAPPQPGKKGDKGEKGEPASVKHSTTQKSITGEKGE
RGEKGEPGIPGAKGDPGYTGETGRDGMKGEKGLPGGPGDRGRQGNFGPPGPPGQKGDRGE
TGLNGLAGKPGQKGEPGLPGRPGERGLLGPPGPPGGGRGSPGAPGPKGPRGYTGAPGPKG
LDGVDGPPGAQGFSGPKGGPGLPGRPGVEGPPGEKGEKGNAGRTGPTGPIGPMGHTGPPG
PEGQKGEPGYPGIGIVGPKGDDGTPGIPGLKGQKGERGFKGNAGAPGDSKFGRPGSPGRA
GLPGQKGDQGRPGIPGQKGDMGAKGDVGGKCSSCPAGAKGDKGDRGLDGIPGTPGARGPP
GAVGAPGERGADGIAGMDGPPGEKGEDGRDGMMGPEGPAGKDAIIDISLTKTEKGDKGDR
GYPGPAGLKGDRGESGFPGISGAKGEIGAKGDKGYAGQPGVDGMPGNPGRDGRDGIPGLS
IKGEPGRPGRDGIKGDKGTSGYPGQKGDPGSCDAAMLTVPAKGNKGDRGIPGMPGQMGPM
GDKGDQGRIGPKGEMGPQGPVGPVGPRGLTGPRGEKGNPGVMGAPGNPGKDGLRGPPGRN
GERGLKGEQGISVAGPPGPQGRDGLPGLKGDRGSPGAYGPPGPDGAVGYPGDKGDSGLPG
PTGMAGPVGPKGDIGPLGPPGTPGPPGKPGVDGVQGRDGAKGEPGNPGWVGMPGSKGERG
APGNDGPKGFPGATGAPGKRGTPGPSGIDGMKGDKGEIGLTGNDGLTGPRGPPGAPGPMG
IKGDIGPQGPPGTDGRPGLNGEKGAQGLPGFDGPQGLPGDAAEKGQKGEPGLSGLRGPEG
QPGINGLPGEKGSAGVSIRGTPGAKGDKGDRGRDGIDGRDGKPGQKGEAGFPGMKGQRGD
KGDMGLSGAPGAPGIDGRPGETGAPGPVGYTGAKGEKGDYGYQGVQGVKGDKGATGIPGL
DGLPGPKGERGFPGANGIDAQPITIKGDKGEMGEFGVVGLPGPMGLKGNQGIPGLRGQKG
ERGLTGPLGMPGLAGEPGLKGDQGPAGEPGAPGPAIKGEKGLPGRSGKNGREGAPGVIGQ
KGEKGLPGLAGMPGLVGLPGPVGPPGLKGERGPMGLPGRDGADGLPGAPGLKGDMGFTGP
KGERGLTGFEGQKGDKGEQGLPGPQGLPGLNGMKGDRGYPGMDGLPGPVGAPGEKGATGP
KGRDGRDGTPGARGQKGEPGLLPPPGPKGEPGHPGRDGEKGDRGAPGPRGLIGLQGERGE
KGEMGLTGRIGQIGRPGPKGEQGLPGPPGRDGAPGLIGIQGEAGAACTAAQDYLTGILLV
KHSQSEETPRCPLGQIELWTGFSMLYVDGNDYAHNQDLGSAGSCVRRFSTLPVMSCGQNN
ICNYASRNDKTFWLSTSAPIPMMPINNEEISKYISRCVVCEAPANVIAVHSQSLTIPDCP
YGWESLWIGYSFVMHTAVGNGGGGQALASPGSCLEDFRATPFIECNGGKGHCHFYETMTS
FWLVTVENNEQFQRPAMQTLKAGNLLQRVSRCTVCIKNST
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atgatggagccccactggaagcggctaattttcgccgctacaatagctggagcgttactt
ggcgcaaatgcgcaattttggaaaaataccgacacgggtgcaatttataatccacccagc
cattatagagatgaatcaacgcctccacgttcaccaatcgatgatagttatgcgattatc
gaaactgtgaccacaaatcgtcaaggacctcctcgaaattgtacatccggcacagttggt
tgtatcccaaaatgttttgctgagaagggtaaccgcggttttcccggtgaagctggtcca
cccggtccgaaaggcatgcctgggtatcctggtcccgaaggtccacccggcgataagggc
caaaaaggtgatcccggtccattaggtccacgcggctataaaggtgaacgaggtgtaccc
ggcattcctggtatgaatggcgtacccggtgtacagggtatctcaggcaatcctggctcc
cctggatcacctggcaaagatggttgtgacggccaagatggtatacccggtctgcaaggt
ctgagtggtatggctggtccacgtggttatccgggtcagcctggtgttaagggtgaaaag
ggtgaacctgcaaaggaaaatggtgattatgctaaaggtgaaaagggtgaacctggtttc
gctggacgctctggcaacccaggtcccgaaggtctacaaggtcctaaaggtgatcgtggt
gatactggacagtatggtccacctggtccacgtggtgaacgcggtttgaagggtgataaa
ggtgcgccatgctttgcccctccacaacctggcaagaaaggtgacaagggtgaaaaggga
gagcccgcttctgtgaaacattcgacgacgcaaaaaagcattaccggagaaaagggcgaa
aggggtgagaaaggagaaccaggtatacctggagcgaaaggtgatccgggttatactggc
gagactggtcgtgatggtatgaagggtgaaaaaggtttgcctggcggtccaggtgataga
ggacgtcaaggtaatttcggaccccctggcccacctggtcaaaagggtgatcgtggtgaa
actggattaaacggtttggctggtaagcctggtcaaaagggtgaaccgggtcttcctggc
agacccggtgagcgcggtttacttggacctccaggtccaccgggtggtggtcgaggctct
cctggtgcacctggccccaaaggtccccgtggttacactggtgctcctggtcccaagggg
ttagatggtgttgacggtcctcctggtgcacaaggtttttctggacctaaaggtggtcca
ggtttacctggccgccctggtgttgaaggtccccctggcgagaaaggtgaaaagggtaat
gcaggtcgcacaggtcctactggtcccattggtcccatgggtcatactggtccaccaggt
ccagaaggtcaaaagggtgagcccggatatcctggtattggtattgtgggtcctaaaggt
gatgacggcacacctggtattcccggattaaaaggtcaaaaaggtgaacgaggtttcaaa
ggtaacgctggtgccccaggagattcgaaatttgggcgtccaggttctcctggacgtgct
ggattacctggccagaaaggtgatcaagggcgccctggtattcccggacaaaaaggtgac
atgggtgccaagggtgatgtaggcggtaaatgctcgtcctgtcctgctggtgctaaaggt
gataaaggtgatcgcggcttggacggtattcctggaacacccggtgcacgaggtcctcct
ggagctgttggtgcccctggcgaacgtggcgctgatggaattgctggtatggatggacct
cctggcgaaaaaggtgaagatggcagagacggaatgatgggacctgaaggtcccgctggt
aaagatgcgataatcgacataagtcttaccaaaactgagaagggagataaaggtgacaga
ggctatcctggaccagctggtttgaagggagaccgtggtgaatctggttttcctggtatt
agtggtgccaaaggagaaataggtgctaaaggtgataagggttatgctggtcagcctggt
gtggatggtatgcctggaaacccaggacgcgatggacgcgatggtatccccggtttaagc
ataaagggtgaacctggtcgcccaggtcgtgatggaattaagggtgacaaaggaacctcc
ggatatcctgggcaaaagggtgatcctggaagctgtgacgccgccatgttaacagttccc
gccaagggaaataaaggtgatcgaggaatacctggaatgcctggtcaaatgggtcccatg
ggcgacaagggtgaccaaggacgtattggaccgaaaggtgaaatgggtccacaaggtccc
gtaggccctgtaggtccacgcggtttgacaggtccacgcggagagaaaggcaatccaggt
gttatgggtgctcctggaaaccctggtaaagatggattaagaggacctcctggcagaaac
ggagaacgtggactaaaaggtgaacaaggtatctctgttgctggtccaccaggaccgcaa
ggtcgtgatggcttacctggcctgaaaggtgatcgtggttctcctggcgcgtacggccca
ccgggtccagatggagctgtgggttatccgggcgacaaaggtgattctggtttgcctgga
cccactggtatggctggacctgttggtcctaaaggtgatattggtccacttgggccaccc
ggaactcccggtccacctggtaagcctggtgtagatggtgtacaaggacgtgatggagca
aagggcgaacctggcaatcctggttgggttggtatgcccggatctaagggcgaacgcggt
gcccctggtaacgatggacccaaaggcttccctggcgctactggagcccctggaaaacgt
ggtactcctggtccctctggcatagatggcatgaagggagacaagggtgaaatcggctta
actggcaatgatggtttaactggacctcgaggacctcccggtgcccctggcccaatggga
attaaaggtgatattggtccacaaggtccacctggaactgatggtcgtcctggattgaat
ggcgaaaagggtgctcaaggcttgcctggttttgacggtccacaaggtttacccggtgac
gctgcggagaaagggcaaaagggtgagccgggtctgtctggtttacgcggtcctgaagga
caaccgggtataaatggtttgcctggcgaaaaaggttccgcgggagtgtccattcgtgga
acccctggagccaagggtgataaaggtgatcgtggccgggatggtatcgatggacgtgat
ggcaagcctggacagaagggtgaagctggattccctggtatgaaaggacaaagaggtgat
aagggggatatgggcctatcgggtgccccaggtgctcctggcatagatggaagacccgga
gagacaggcgcacctggtccagttgggtatactggcgctaagggagagaaaggggactat
ggttatcaaggagtacagggtgtaaaaggtgacaagggtgctactggtatacctggttta
gatggacttcctgggccaaaaggtgaacgtggttttcctggtgcaaacggaattgatgct
cagccaataaccattaagggagataaaggagaaatgggtgaattcggagtggttggcttg
cctggtcctatgggccttaagggtaatcaaggtataccgggattaagaggacaaaaagga
gaacgtggactaactggtcctctgggcatgcctggtttggctggtgaacctggtcttaag
ggtgatcaaggtcctgctggcgagcctggagcacctgggcctgccatcaagggtgaaaaa
ggtctgcccggaaggtctggaaagaacggtcgtgaaggtgcccctggtgtaattggacaa
aagggcgaaaagggtcttcctggcctcgctggtatgcccggtttggttggcttgcctggc
cctgttggtccacctggcttaaaaggcgaacggggccccatgggacttcctggacgtgac
ggcgctgatggcttgcctggagctcctggtctcaagggtgatatgggtttcacaggtccc
aaaggagagcgcggtttaactggatttgaaggccaaaagggtgacaagggtgaacaaggc
ttacctggaccacaaggtttaccaggtttgaacggaatgaaaggtgatcgcggctatcca
ggtatggatggattacctggacctgtgggtgcgcctggtgaaaagggtgcgaccggacct
aaaggtcgcgatggacgagatggcacgcctggagcgcgtggtcaaaagggtgaacctggc
ctactaccaccaccaggacctaaaggtgaacctggacacccaggtcgcgatggcgagaaa
ggagatcgcggtgcacctggaccacgtggtttgattggcttacaaggcgaacgtggcgag
aaaggtgaaatgggcttaactggtcggattggacaaatcggacgaccaggacctaaaggt
gaacaaggcttgcctggaccaccaggacgtgacggtgctcccggcctgataggtatacaa
ggtgaagccggtgcagcgtgcacagcagcacaagactaccttaccggcatactgctggtc
aagcacagtcaatccgaagagacaccacgttgcccgctgggccaaatcgaactatggaca
ggcttttccatgttgtacgtagacggcaacgactatgcgcacaatcaagatctcggctct
gctggttcctgtgtgcgtcgcttctcaacactgccagtgatgtcatgcggccagaacaac
atttgcaattatgcatcgagaaacgataagaccttctggctatcaacatcagcccccatt
cctatgatgcccattaataacgaagaaatcagcaaatatatttcgcgctgtgtggtctgc
gaggccccagcgaacgtgatcgctgtacacagccagtcgctaacaattcccgactgcccc
tacggatgggaaagcctatggataggctacagcttcgtaatgcacactgccgtaggtaat
ggcggcggtggtcaggcgttggcatcgcccggttcttgtctggaagacttccgcgccact
ccattcattgagtgtaatggcggtaaaggtcactgccacttctacgaaacaatgaccagc
ttctggctggtcacagtcgagaacaacgaacagttccaacgccccgcaatgcaaacactc
aaagccggcaatttgctgcaacgagtatctagatgtacagtctgtataaaaaattcaaca
taa
DBGET
integrated database retrieval system
