Anastrepha obliqua (West Indian fruit fly): 129249203
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Entry
129249203 CDS
T09777
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq04512
ECM-receptor interaction
aoq04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129249203
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
129249203
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aoq04147
]
129249203
00536 Glycosaminoglycan binding proteins [BR:
aoq00536
]
129249203
Exosome [BR:
aoq04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129249203
Glycosaminoglycan binding proteins [BR:
aoq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129249203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129249203
NCBI-ProteinID:
XP_054744859
LinkDB
All DBs
Position
5:95592955..95661168
Genome browser
AA seq
1840 aa
AA seq
DB search
MKLPRGRQGLLGGGAQRRITNTYLWSLIFAIYLITFVRNDYSFADAKESNKNCNNTVCDC
KGLKGRPGAIGPKGYPGIEGPPGDVGPLGPFGRRGEFGDPGEYGEQGEKGHRGDIGELGL
SGRPGLTGFPGEDGPKGISGIDGCDGKPGLQGSPGFPGENGRRGPMGKPGPAGPTGDAGE
GGINSKGTKGNRGERGPDGVDGQPGYIGMKGYKGDIGYPGIEGSKGEIGIKGYKGDMAEP
ANLQLFAQGEQGEKGEPGDGEESEWNFGKVIKGYKGDSGPNGWPGTVGAPGEPGDVGPTG
MPGVRGDGGEPGERGKPGKPGEPGFPGEKGFKGAPGYNGLDGQDGFKGEHGDDGFDGIPG
VQGPAGPPGIYDPNLDKSFPGPQGPQGDIGPPGNPGLSGIPGGPGRRGPMGPPGPPGDIG
LDGAAGRRGDTIKGDDGDYGYLGPPGPMGAPGNPGLVGRPGQRGQPGLNLRGPKGFAGQV
GLAASDGYRGDRGEVGLTGDKGEPGDGLNIIGPPGSDGPPGIRGQPGLNGTPGWPGLVGD
KGVRGDDCGICPAGPRGMKGLQGDAGYAGLHGSRGYIGLTGERGPKGWPGNPGPRGRKGI
PGPPGANGDIGPPGPPGRPGYSYKIGNIQKPERGDQGDAGERGEQGATGERGVNGIPGLN
GAKGETGLRGDFGDIGRPGRDGSPGRPGYEGKPGADASTPKLYLVGNSGRDGRIGERGEA
GSEGLKGDKGEPNPGQIYDNKGEVGDKGYIGPAGEKGFKGEVGEEGIIGLPGDIGLPGPT
IEGPVGAKGWPGLTGDYGQHGAPGNVGLDGLPGLDGLPGLKGLRGEPGRYVLPGEMGPGG
NPGVRGEEGDIGFPGSPGPAGRPGVKGIKGSKGDDGAFGLQGLPGNKGQRGDYVVGYPGL
EGAPGRDGRTAPHGRKGQKGEIGMPGPVGVQGAKGSIGFPGRRGRIGDQGRSGEPGQTGS
PGWVGIPGEQGDRGDIGFDGRIGDMGPRGSFGNMGPKGQSGDFGPIGRAGVSGIPGRKGS
LGDRGFPGRPGAKGNAAYSGIKGEGGEPGLMGPRGYDGLPGMKGERGPEGDTPVALDGVP
GIKGETGIPGRFGLEGLAGLKGEQGEYGLIGLVGDKGERGDEGLVGYRGRNGLPGRKGAI
GLIGLTGAVGAKGDIGETGYPGIPGMIGDQGDVGLVGDAGAQGEQGDIGYPGRPGILLRG
FAQRGDKGEQGFQGEQGPIGEQGPDGAPGYVGLKGERGDIGFAGAPGTDGYAGLKGQTGD
KGYKGATGPIASFIENGDEGEPGYDGFPGRPGRLGPKGAPGEQGEYGENGLIGLPGISIG
GPKGQSGDAGYPGPPGRNGLYGTTGLKGERGNYGFQGERGEPGFAIRGRIGDVGDIGLMG
EAGFDGLKGEQGIQGFEGRPGPAGFRGLRGPQGDAGWSGIDGLEGLEGAKGERGFTYDFS
MAPPGDRGEPGLDGFKGEIGDIGEIGEIGSTGWRGLKGYQGEEGFMGAVGADGPQGERGM
PGLEGLPGLQGVPGPQGPAGPPAPPPPLPKSRGFVFVRHSQSVRIPECPANTNKLWEGFS
LAGNIGSSMAVGQDLGQSGSCMMRFTTMPYMFCDVNNVCNYAQNNDDSLWLSTAEPMPMN
MAPIQSFDLMKFISRCVVCETTTRIIALHSQSMSIPDCPNGWEEMWTGYSYLMTTTDNTG
GIGQNLVSPGSCLEDFRTNPVIECHGHGRCNYYDPLASFWLAVIEEYEQWVQPKQQTLKA
DQTSKVSRCTVCRRKNDSYIRRLSSVQVQATEFRRGPERVVPEPRVVPSPIRRPQQTPAR
NTYYRPNYRRPDPHGRPYNYAGQQYGGSRIRRPREDTYAP
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgcccagaggccgtcaaggtctcttgggtggtggcgcccaaaggcgaataacg
aacacttatctgtggtcgctgatattcgcaatttatctgattaccttcgtgagaaatgac
tacagcttcgccgatgccaaggaatcgaacaaaaattgcaacaacacagtttgtgattgc
aaaggactgaaggggcgccctggtgctattggtccaaaaggttatccgggcattgagggt
ccacccggtgatgtgggtccgttggggccatttggtcgtcgtggtgaattcggcgatcct
ggagagtatggtgaacaaggcgaaaaaggacatcgaggtgacataggagagctggggcta
tctggtcggcctggtctaacgggattccctggtgaggatggacccaagggcattagtggc
attgatggttgcgatggcaaacccggtctgcagggttcacctggttttcctggtgaaaac
ggtcgccgtgggccaatgggcaagcctggcccagcaggtcccaccggtgatgccggcgaa
ggaggtatcaattccaagggtaccaaaggtaatcgtggtgaacgcggccctgatggtgta
gacggccaacctggctatattggcatgaagggctacaaaggtgatatcggttatcctggt
attgaaggctcaaaaggtgaaataggtataaagggttataagggagatatggcggaaccg
gcgaatctccagctttttgcacaaggtgaacagggcgagaagggtgaacctggcgatggc
gaggagagtgaatggaattttggcaaagtcataaaaggttataagggtgacagtggtcca
aatggctggccaggtactgttggtgctcctggtgaacctggcgatgtgggtccaacagga
atgcctggtgttcgtggtgacggtggagaaccgggtgagcgcggaaagcctggcaaacct
ggtgagcctggtttccctggtgaaaaaggttttaaaggtgcaccgggttataatggtctc
gatggccaagacggtttcaaaggtgaacatggtgatgatggattcgatgggattccaggt
gttcaaggtccagcaggcccgcctggtatttacgatcctaatttggataaatctttcccc
ggtcctcaaggtccacaaggtgacattggtccaccgggtaatccgggtttatctggcata
cctggcgggccaggccgccgtgggccaatgggtcctcccggcccccccggtgacataggc
ttggatggtgcagccggtcggcgtggagatactattaaaggtgatgacggtgattatggc
tatttaggaccgcctggccctatgggtgctccaggcaatcctggccttgtgggacgccct
ggtcaaagaggacaacctggcttaaatttgagaggacctaaaggattcgctgggcaggtg
ggtctagctgcaagtgatggttatcgcggagatcgtggtgaagttggactaactggagac
aaaggtgaacctggtgatggtttaaatatcattgggccacctggatctgacggcccacca
ggcataagaggccaacctggtctgaatggtacccccggctggccaggcttggttggtgac
aagggtgtgcgtggtgatgattgtggaatatgcccagctggcccacgtggtatgaaaggc
cttcagggtgatgccggatatgctggccttcacggctcgcgtggctacatcggcttgaca
ggtgaacgtggtcccaaaggttggcctggtaatcccggcccgaggggccgaaaaggaatt
ccaggtcctcctggcgccaatggtgatataggaccccctggtcctcctggccgtccaggt
tactcttataaaatcggcaacatccaaaaacctgagagaggtgaccaaggcgatgctggc
gaacggggcgaacaaggcgctactggtgagcgcggagtcaatggtatacccggcctgaac
ggtgcaaagggtgaaactggcctgagaggagattttggagatattggtcgtccaggtaga
gatggttcaccaggtaggcctggttacgaaggaaaacctggcgcagatgcttcaacgccc
aagctttatttagttggtaattctggaagagatggtcgcattggtgaacgcggtgaggca
ggcagtgaagggctaaaaggtgacaaaggtgaaccgaatcctggccaaatttatgataac
aaaggcgaagttggtgataaaggatatattggccccgctggggaaaaaggttttaagggc
gaagttggcgaagaaggcataataggattaccaggtgatattggcttacctggtccaacg
attgaaggtcctgtaggtgctaaaggatggcctggcttgaccggtgattatgggcaacac
ggtgctcctggaaatgtcggtcttgatggattacctggtctcgatggtttacctggtcta
aaaggactgcgcggtgaacctgggcgatatgttttgccaggtgaaatgggtccaggcgga
aatccaggcgttaggggtgaagaaggtgatattggattccctggttcccctggaccagct
ggaagacctggtgtcaaaggcattaaaggttcgaaaggtgatgatggagcatttgggttg
caaggtttgcctggtaataagggacaacgtggtgattatgtggtcggatatcctggcctt
gagggagctcctggcagagatggcagaaccgcaccgcatggacgcaagggtcaaaaaggt
gagattggcatgccaggaccggtaggagtgcagggtgccaagggtagcattggattccca
ggacgacgtggtcgtattggtgaccaaggtaggtctggtgaacctggtcaaaccggaagc
cctggctgggttggaattcctggcgaacaaggtgaccgcggtgatatcggttttgacgga
agaattggagacatggggccacgtggctcttttggaaacatgggaccaaaaggccagtct
ggcgattttggaccgattggtcgtgctggagtatccggtattcccggacgtaaaggttcg
ttgggtgatcgaggttttcccgggcgtcctggtgctaaaggcaatgcagcatatagtggc
attaaaggtgaaggcggtgaaccaggtctgatgggaccacgaggctatgatggattaccc
ggaatgaagggtgaacggggtcctgagggcgatacaccagtagctttagatggagtacct
ggcataaaaggagaaacgggtattcctggacgttttggcttggaaggcttagcaggtctc
aaaggcgaacaaggtgaatacggtttaatcgggcttgttggggataaaggcgaaagagga
gacgaaggattggttggttaccgtggacgtaatggcttacctggcaggaaaggtgctatt
ggacttataggattaactggtgctgttggggctaagggagatattggtgaaaccggctat
cccggtattcccggtatgataggtgatcaaggtgatgttggtctggtcggagatgcaggt
gctcaaggcgaacagggtgatataggttatccaggtcgacccggtatattgctacgaggt
ttcgctcagagaggtgataaaggcgaacaaggtttccaaggcgaacaaggtccgattggt
gagcaaggccctgatggggcacccggttatgtaggtcttaaaggtgaacgcggcgatatt
ggattcgctggtgcaccaggtacagatggatatgctggtctcaaaggacaaacaggagat
aaaggttataagggtgccactggacctattgcttcatttattgagaatggtgacgaaggt
gagccgggatatgatggcttccctggacgccctggacgtttgggtcctaagggagcccct
ggtgagcaaggcgaatatggagaaaatggcttaatcggattgccaggtatttctattggt
gggccaaaaggacagagtggtgatgcaggctatcctggacccccaggacgcaacggtttg
tacggcacaactggccttaaaggtgaacgaggcaattacggtttccaaggcgaacgcggt
gaacctggtttcgctattcgcggcagaattggtgacgttggtgatatcggtctgatggga
gaggcaggttttgatggactaaagggtgaacaaggtatacaaggatttgaaggacgtccc
ggtccagctggcttccgcggtctacgtggaccacagggtgatgccggttggagtggcatt
gatggtctagaaggtcttgagggcgccaagggtgaacgcggttttacctacgattttagt
atggccccacctggtgatcgtggtgagccaggccttgatggctttaaaggtgaaataggc
gacatcggtgagattggcgaaattggaagtacaggttggcgtggtcttaaaggttaccag
ggcgaagagggattcatgggtgctgtaggagctgatggtcctcaaggtgaacgaggtatg
cctggtctagaaggactacctggtttgcaaggagtaccaggaccacagggtccagctggt
ccacctgcaccaccaccaccactgccaaagagtcgcggatttgtatttgtgcgtcattca
caatcggtacgcatacccgagtgtccggcgaatacgaacaagctgtgggaaggcttctcg
cttgcaggcaacattggtagcagcatggcagttggacaagacctaggacaatccggttcc
tgcatgatgcgtttcacgacaatgccatacatgttctgcgacgtgaacaatgtgtgcaat
tacgcgcaaaataatgacgacagcttgtggctctccacggctgaacctatgccgatgaac
atggcgcccatacagtctttcgatctgatgaagttcatttcacgttgtgtagtctgcgaa
acgaccacgcgtatcattgcgctacacagccaaagcatgagtataccggactgtccgaat
ggttgggaagaaatgtggaccggttacagttatttgatgactacaactgataacacaggt
ggtattggtcagaatttagtttcgcccggttcttgcttggaagacttccgcaccaatccg
gtcattgagtgtcatggtcatggtcgctgcaattattatgatccactcgcctccttctgg
ttggctgtgattgaagaatacgaacaatgggtgcagccgaaacagcaaacactaaaggcc
gaccaaaccagcaaagtcagccgctgcaccgtttgccggcgcaagaacgattcatatatc
cgacgcctctcgtcggtgcaagtgcaggctactgagttccgtcgcggtcctgagcgtgtt
gtgcccgaaccacgagtcgtgccatcgccaatacggcgaccccaacaaacgccagcgagg
aacacctactatcgcccgaactaccgacgtcccgacccgcacggtcgcccctacaactat
gccgggcagcagtatggcggcagtcgcatacggcgtccacgtgaagacacatacgcgcca
taa
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