Anastrepha obliqua (West Indian fruit fly): 129249405
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Entry
129249405 CDS
T09777
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq03013
Nucleocytoplasmic transport
aoq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129249405
09122 Translation
03013 Nucleocytoplasmic transport
129249405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoq03019
]
129249405
03041 Spliceosome [BR:
aoq03041
]
129249405
Messenger RNA biogenesis [BR:
aoq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
129249405
Spliceosome [BR:
aoq03041
]
Complex C
Other components
EJC/TREX
129249405
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
129249405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
129249405
NCBI-ProteinID:
XP_054745181
LinkDB
All DBs
Position
5:complement(108380223..108402101)
Genome browser
AA seq
1738 aa
AA seq
DB search
MRRLRTSTKAQTAGTATTTTKSGNGGVGGSISISTASLLVTPHAGSKNTYNSSFSGSGVG
VLTTSSSTGDPGAVSTIATIADTSTAAGRQKHSMDVKLNADVFKNFEKSGKSEFLKFLKQ
QVKENDNPIFGKNDEFKFGISRAIYDLLWQGLRCTLKKDSVLNTLADIVTMHTDFPSVIL
DIVNILDAETSLMTDGIQEERLMFTQIVKDLDKVISDKLIKERLEIDTLQDVGVVKNKVF
YTKFIKIKTKLYYKQRRFNLFREESEGYAKLITELNQDFEEGVTATSIMDIIKSLIGCFN
LDPNRVLDIIIESFETRPERRHLFIPLLRAYMPNGSIICEVLGYKFRYFADTRTPRSLFH
VCSLLLKYGVIELQDIYQWLTPIDKMIINEWENDLTEAKEFVRKLNIIVTNKDKEHVEPE
MEKPYNEEKYYANQKFGLCEGLLKVGDWENALNIIKKLPEQSVIVHEPIARALAELIHIS
IDYVYTEKCFNANTRRSKLAEDKKLLQKLQVREFSQLRNYTIPMVIALGPALHFDTVLMY
KLIRILRTIMTDMGVDSLNAPTPNTESETLYFEVMTIMDAAILPALSYLDCNCPMAEEIW
TVLKFFPYHFRYSLYARWKNDTYQVHPVLIRRRGLAHKNIKALMKRVSKENVKPVGRLIG
KLSHCAPGFLFDYILLQIQIYDNLIGPVVDSLKYLTSLSFDCLGYCLIEALAMADRDRFK
HDGTSISLWLQSLASFCGAIFKKYNIELSGLLQYVANQLKSQKSLDLLILKEIVQKMAGV
ESAEEMTNEQLNAMCGGELLRGEAGYFSQVRNTKKSSQRLKDALANNDLAVAICLLMAQQ
KHCVIYRETAQSHLKLVGKLYDQCQDTLVQFGTFLGSTYSVDEYVERLPSIIAMLQEYHI
NADVAFFLARPMFTHQINQKYDQLRKADPNAKKLTTNQKLQKYLEATNLIMNPIVESVRP
LHGPKVWEDISPQFLVTFWSLSMYDLQVPADSYQKEISKLKQLSLQAAESKDSNASKNKK
EQERYIALMDKLQDERKKQQEHVDKILQRLQQQKDNWFLSRSAKSAKNETITQFLQLCLF
PRCTFTALDALYCAKFVHTIHNLKAANFSTLLCYDRIFCDITYSVTSCTENEATRYGRFL
CAMLETVMRWHADQAVFNKECANYPGFVTKFRVSNQFSEANDHVGYENYRHVCHKWHYKI
TKAIVFCLDSKDYMQIRNALIILMRILPHYPVLAKLAQIIERKVEKVREEEKNKRPDLFV
IASSYIGQLKTRAAQMIKESDFHQVTERQLRVESATAAATAAAGAAAIAPLASAGTQSSV
IPAATTNNATGNANIINLGDATAKPAPVVQQIPTVQHEAAPILAKQVNNGDVRSAEKREK
EKVVKQIIKMEREPISGITSNNPINELETRSTSIVINDRSEHSDRRSSSRSLKDVKKEER
TREREREREREREREKEREQREREREKERERERERERERELRELREREREREHRSHNDEL
DLSGGSAGGGIGSSVISGSNTIISTRSKREKRRGEERYRLESPSLESIELLENKHEHHEY
ERERERERERERERARDLSSVSNESNGSSMHRRSQDVIEYDKDAKRRKVESSTTSSSNSK
KQVIDDLVESTKKERGIKNKERKEKLTEEEKDARKERKLGRKRERLEESSSSEHKRRRDV
QNGDDDLRERDKYHTREKSPHMRSETRERSHEKFERDRSTREERLYGTSKSTRSRIGY
NT seq
5217 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgactgcggacctctacgaaggcgcagacggctgggacagcgacaaccacaacg
aaaagtggaaacggtggtgttggtggcagtatcagtatatcaacagcatcgttactagta
acaccgcatgcgggcagtaaaaatacatataacagcagttttagtggaagtggtgttggt
gtcttgacaaccagcagtagtacgggtgatccaggagccgtctcaaccattgcaacaata
gcagacacttcaacagctgcgggacgccaaaagcacagcatggacgtaaagttgaatgcg
gatgtatttaagaactttgaaaagtcggggaagagtgaatttttgaagttcttaaaacaa
caagtgaaggagaatgataatcccatttttggcaaaaatgatgaatttaaattcggaatc
tccagggccatctacgatctactatggcaaggactacgctgcacgttgaaaaaagactcg
gtgctgaatactttggcggatattgtgacaatgcatactgatttcccctcagtcatacta
gacattgtgaatatactggatgcggagacttctttaatgaccgatggcatacaggaggag
cgtcttatgttcacacagattgtaaaagatctggacaaagtgatttcggataagctgata
aaggagcgtttagaaatagatactttacaggatgtcggggttgtaaagaataaggtcttt
tacaccaaatttatcaagataaaaactaagctttattacaagcagcgccgcttcaatctc
tttcgcgaggagagcgaaggttacgccaaactaatcactgaattgaatcaggatttcgag
gaaggtgtgacggcgacaagtataatggatatcattaaatcgcttataggctgcttcaat
ttggatccaaatcgtgtgcttgatataataattgaatcatttgaaacacgtccagagcga
cgccatctgttcataccactgctgcgtgcgtacatgccaaatggttcgattatatgtgaa
gtgctcggctacaagtttcgctacttcgccgatacaagaacgccacgttcactctttcac
gtttgttcactacttttgaaatatggcgtcattgagctacaagatatttaccaatggctc
acacccatcgataaaatgataataaacgaatgggagaacgatctaacggaggcgaaagaa
tttgtgcgcaagctaaatattattgtaacgaataaagataaggaacatgttgaaccagaa
atggagaagccatacaatgaggagaagtactacgccaaccagaagttcggtttgtgtgaa
ggtctcttaaaagtgggagattgggaaaatgcgcttaatattatcaaaaaattacccgaa
caatcggttatagtgcatgaaccaatcgcacgcgcgctcgctgagctcatacacatctcc
attgattatgtgtacacggaaaagtgctttaatgctaatacgcgtcgttccaaattggct
gaggataaaaaattgctacaaaaattgcaagttcgtgagttttcccagttgcgcaactac
accataccaatggtgattgcacttggtcctgccttgcatttcgacacggtgctcatgtat
aaactaatacgaattttgcgcacaataatgaccgacatgggtgtggatagcctgaacgca
cccacccccaatactgaatcggaaacgctttacttcgaggtgatgactattatggacgca
gctatattaccagcactctcctacctagactgcaactgcccaatggccgaagagatttgg
actgtactgaagttcttcccataccattttcgctacagtttgtatgcacgttggaagaac
gacacatatcaggtgcatccggtgctaatacgccgccgtggcttagcgcataaaaatata
aaagcgttaatgaagcgtgtcagtaaggagaatgtgaagccagttggccgccttattggc
aaattgagtcattgtgcgcccggctttctctttgattatattctgctacaaattcaaatc
tatgacaatttaataggcccagtagtggattcgttgaaatatctcacatctctatcgttt
gactgtttgggctattgcctcattgaggcacttgccatggctgatagagatcgtttcaag
catgatggcacctcgatttccttgtggctgcaaagtttagcctccttctgtggggcgatt
tttaaaaagtacaacatcgaactgagtggtctgttgcaatatgtagctaatcaattgaag
tcacaaaagagcttggatctgttaatcctaaaggagattgtgcaaaaaatggccggcgtg
gagtcggctgaagaaatgactaatgagcagttaaatgctatgtgcggtggggaattacta
cgtggcgaggccggttactttagccaagtgcgtaatacgaagaaatcgtcgcagcgcctg
aaagatgcgctggccaataacgatttggctgttgctatttgcttgcttatggcccaacaa
aagcactgcgtgatctatcgcgagactgcccaaagccatctaaagctggttggcaagctt
tacgatcaatgtcaggatactctggtacaattcggcacattccttggctccacctactcg
gtagatgaatatgtcgaacgtttgccatcgatcattgccatgttgcaggagtatcacatc
aatgcagatgtggccttcttcttggcgcgtccaatgttcacacatcaaatcaatcaaaag
tacgatcagctgcgcaaggccgatcctaatgccaaaaaattgactactaatcaaaaatta
caaaaatatctggaagccaccaatttaattatgaatcctattgtggaatcagtgcgtcca
ctacacgggccgaaggtttgggaggatattagtccgcaatttttggtgaccttctggtcg
cttagtatgtatgacttgcaagtacccgccgacagttatcagaaggaaatttccaaatta
aagcaactttcgctgcaagcagcagaatcaaaggattcgaatgcatctaagaataagaag
gaacaggaacgttacattgcgctgatggataagctgcaggatgagcgtaagaaacagcag
gagcatgtcgataagattttgcaacgtttacaacagcaaaaggacaattggttcctttcg
cgctctgccaagtccgcgaaaaatgaaaccattacacaattcctgcagttgtgcctattt
ccaaggtgcacctttactgccctcgatgcgctctattgcgcgaaattcgtacacaccata
cacaatttaaaggctgccaatttttccacactgctttgctatgatcggatattttgcgac
atcacttactcggtcacatcctgcactgaaaacgaggccacacgttatggccgcttcctg
tgtgccatgctggaaacggtaatgcgctggcatgccgaccaggctgtcttcaataaggaa
tgcgcaaattatcctggctttgttacaaagttccgtgttagcaatcaattttccgaggca
aacgatcacgtcggctatgaaaactatcgacatgtctgccataagtggcattataaaatc
actaaggctattgtcttctgtttggactctaaagactatatgcaaatacgtaacgcactt
attattctcatgcgcatattaccgcactatcccgtactcgccaaacttgcgcagatcatt
gaaagaaaagtggagaaagtgcgggaagaggaaaagaataagcgcccagatttatttgtt
atcgcctccagttacattgggcaactcaaaacaagggctgcgcagatgataaaggaaagt
gattttcatcaggttaccgagaggcagttgcgcgtagaatccgctacggcagcagcaact
gctgcagcgggtgccgcagctatcgcgccattagctagcgcaggcacgcagagtagtgtg
attcctgcagcgacaactaacaatgcaaccggcaatgcgaatataattaatttgggcgat
gctactgccaaacctgcgccagtggtgcaacaaataccaaccgtacaacatgaagctgcg
cccattttggccaagcaagtgaacaacggcgatgtgaggagtgcagaaaaacgcgagaag
gaaaaggtggtgaaacagatcattaaaatggagcgcgagcctatatcaggcatcacatca
aacaatccgattaatgagctggaaacgagatccacttcaattgtgatcaatgatcgcagc
gaacacagtgatcgacgtagcagcagtcgttcgttgaaggatgtcaagaaggaggaacgc
acacgtgagcgggagcgcgaacgtgaacgtgagcgagaacgtgaaaaggaacgcgaacaa
cgcgaaagggaacgagaaaaagaacgtgaacgtgagcgtgagcgtgagcgggaacgtgag
ctgcgcgaactgcgtgaacgagagcgagagcgtgaacatcgtagccataatgatgagttg
gatttgtctggtggcagcgccggtggcgggattggcagcagtgtgatcagtggcagtaat
actataatctctacacgttccaagcgcgaaaaacgacggggcgaagaacgttaccgactg
gagtcgccatcactggagtccatcgaattattggaaaacaagcatgaacaccatgaatat
gaacgcgaacgtgagagggagcgagagcgtgaacgggaacgtgcacgagatttgagttcc
gtgtcgaatgagagcaacggttcatcgatgcatcgacgcagtcaggatgttattgaatac
gacaaagatgcgaaacgccgcaaagtggaatcttcgacgacctcttcgtcaaactcaaag
aaacaggttatagatgatttggtggagagtacaaagaaagaacgcggcatcaagaataag
gagcgcaaggaaaagctaaccgaagaggaaaaggatgcacgcaaagaacgcaaattggga
cgtaaacgcgaacggctcgaggagagttccagctcggagcacaagcggcgaagagacgtg
caaaatggcgatgatgatttgcgcgagcgcgacaaataccatacaagggaaaaatcgcca
cacatgcgcagcgagacgcgcgaacggtcacatgagaaattcgaacgtgaccgcagcaca
cgcgaggagcgtttatatggcacctcgaagtccacacgttcgcgcataggctactaa
DBGET
integrated database retrieval system
