Anastrepha obliqua (West Indian fruit fly): 129249467
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Entry
129249467 CDS
T09777
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129249467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoq03019
]
129249467
03032 DNA replication proteins [BR:
aoq03032
]
129249467
Messenger RNA biogenesis [BR:
aoq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
129249467
mRNA cycle factors
Common to processing body (P body) and stress granule
129249467
DNA replication proteins [BR:
aoq03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
129249467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Dsl1_C
Motif
Other DBs
NCBI-GeneID:
129249467
NCBI-ProteinID:
XP_054745276
LinkDB
All DBs
Position
5:2475756..2492559
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AA seq
1245 aa
AA seq
DB search
MEQGFSSGGSNASGDSVGGFGRNSAIGNPSADIVRGGDIIYNKNVTHNSGGNGNGLTPEV
KEIYRSLYIIAKQLDDEKKHISTISQLFQHDLEEKRAQLVQLCKKIIFKDYQSVGKKARE
IMWRKGYYEFIAYVKKNWHKELKDITQSGTQDNLLKVERFLCAGISNYKRMAAKMEEIYD
LDLKYLIDFSIISDGYVREIEHKQSDDDVGGGDISAAHAVDKSLEAVSFALDTIHSALLS
LGDLHRYFLDFRIDTRLKVTKQQAAKYYFEAFKLNPAIGMSQNQLGTLYYGQNHDLDSIY
HYLYSLVSIVPFELSENNVCKLFVAHAEYLEKLDPEKIEFSLQDFYARFYLIVDIFFFDK
EVPDFNSLCHCVLVDLRKVLCSKAFTIEEGCIFKIVSILFFCLSKLKMINSQKVYSLNAF
LVAVCSDLMDACIVNLEQTILAKSVENEEFHGLYADKFEEFNMVVRKSRNEYKNWLVTIG
EADRKEKKANAKPSLKEFSSDSRESQRSNDDYVIKTQDSHKHAKMDGGTDKNVDPISTRS
SDEAKESDLKTPLSCKSKKRGMKLRRRRRKIAQSDDSSCYDTESDMDTDFSTDDEDYTDL
SSNFDTDFSDIEVEPVADDREEADETDFAKRTTKSELQAQNAPRLSSAASKESLTSNEGV
GPTFSDNEDIVIEEEKIIYPDEQQAQLVKQRTDSQEVDSEELLRSFEVLQLNGSGSLNFR
NTDNEESMPPVAEYNEKRQPVDDVNLNPGEPPKKLVYRNKYTKINPNIIVEFARHEPTMR
ALKILYDWLRINHEILFGCYHSNPEFIHKIMKLLNYCNIDIFTRKVYFEREFLTTPNVRT
QLGDLFDVRANVPLAEDFVFKNFDIFQGTQLTLDWETTIREHVTPEEECILRIFKMVDFG
FFICKQKKFNYRFCVKTRRFTENAKKKREEKKSSSRRRERRTMKNATRKRAEGRTRRYSD
RKNGIVRKSYTSNEEKDTVEECKKVPRKGYLRNRNIEKSVTSCNSGGAGGGGGGGTSAST
TTNSAVCDKILMQSSSGADEERSEAMSKKCEIMGKLWLKNEVETLEEELRKNPLNIIMTP
FLVVDAKALTEYNGIVKNLVKTKKFIVLIPNAVLNELDDLKKRSENARNVIRWLEQEFKH
GNRHLRAQRDNENLTLSLLKIPRKLDRDASVFLQIAQFCNHLVANHSDPKSTEFQTNVVT
YLSGDSLYEKQRNQTNFSFTGILDAIPVRYEQISNFYAKFKANKK
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggaacagggtttcagttccgggggctcgaatgcctccggcgatagtgttggaggcttt
ggccgaaatagtgctattggaaatcccagtgcagacattgtaagaggtggtgatattatt
tacaacaagaatgtcacacataacagtggtggcaacggtaacggacttacgcctgaagtg
aaggagatctatagatctctgtatattattgccaagcaactggacgacgagaaaaaacac
attagcactatttcccaactatttcaacatgacctggaagagaagcgtgctcagctggtg
cagctttgcaagaaaatcattttcaaggattatcagtcggtgggcaaaaaagcgcgtgaa
attatgtggcgcaaggggtattacgaattcattgcttacgtgaagaaaaattggcataaa
gagttaaaggacatcacacagtcgggcacccaggacaatctgttaaaagtagagcgcttt
ttatgcgctggcatatcgaactacaaacgtatggctgccaaaatggaggaaatctatgat
ctagacttgaagtacttgatcgattttagcataattagcgatggttacgtgcgcgaaatc
gagcacaagcagtcggacgacgacgttggcggtggcgacattagtgccgcacatgcagtg
gataagagtttggaagcagtttcatttgctttggacaccatacattcggctcttttaagc
ttaggcgacttgcatcgctatttcttggattttcgcattgatacacgcctgaaagtcacc
aaacaacaggcggctaagtactatttcgaagcgtttaaattgaaccctgctattggtatg
tcgcaaaaccaacttggcaccctatactatggccagaaccatgatttggattccatttat
cattacttgtattcattggttagcattgtgccattcgagttgagtgaaaacaatgtttgt
aagctattcgtcgcacatgctgagtatttggagaaattggatccagagaagatagaattc
agtttgcaagatttctatgcacgcttctatttgattgtggatatatttttcttcgataaa
gaagtgcccgattttaattcactctgtcattgtgtgctggtggacctgcgtaaagtgctc
tgctcgaaagcgttcacaatcgaagaaggctgcattttcaaaatagtctcaatactcttc
ttttgcttgtcgaaactgaagatgataaactcgcagaaggtttactctttaaatgctttt
ctagtggccgtatgctctgacctaatggatgcgtgtattgtgaatctcgagcaaacaatc
ttagccaaatccgttgagaatgaggaattccatggcctgtatgccgataagtttgaggaa
ttcaatatggttgtgcgtaagtcgcgcaacgagtataaaaattggcttgtaaccatcggc
gaagctgatcggaaagagaagaaagctaacgcaaaaccatctttaaaagagttctcatct
gattctcgcgagagtcaacgctccaatgatgactatgtcatcaaaactcaggatagccat
aagcatgccaaaatggatggtgggacggataagaatgttgatccgatatcaacgcgttca
agcgacgaggctaaagaaagtgatctaaaaaccccgctttcctgcaagagtaagaaaaga
ggtatgaagttgcgtcggcgtaggcgcaaaattgcacaatcagatgatagttcctgctat
gataccgagagtgatatggatacggactttagcacagacgatgaggactataccgatctg
agctcgaatttcgatactgatttcagcgatattgaagttgagccagtagctgatgaccga
gaggaggcagacgaaactgattttgcaaagcgcactactaaatcagaactgcaagcgcaa
aatgcacctcgtttatcctctgccgcttccaaggaaagcctcacttcgaacgaaggcgtt
ggtccgacgttctccgataatgaagatatcgtaattgaagaggagaaaattatttatccc
gatgaacagcaggcacagcttgtaaagcaacgcactgactcacaggaagtcgatagcgag
gaattgctgcgcagcttcgaagttttgcagttgaatggcagcggctcacttaactttagg
aataccgacaatgaagaatcaatgccgccagtcgctgaatataacgaaaaacgccagcct
gttgacgatgtgaatttaaatcccggcgagccgccaaagaaattagtttatcgcaataag
tacactaaaataaatcccaatattattgttgagtttgcccgtcatgagccgactatgcgt
gcattgaaaatcctttacgattggctacgcatcaatcatgaaatactcttcggctgctat
cactccaacccggagttcatacacaaaataatgaagttgttaaattattgcaacatcgac
attttcactcgcaaagtgtacttcgaacgtgagtttttgactacacccaatgtacgcacc
caactcggggacttatttgatgtgcgtgccaatgttccattagctgaggatttcgttttc
aaaaatttcgacatattccaaggcacacaacttactctagattgggagacaactatacgc
gaacatgttacacccgaagaggagtgtattttgcgcattttcaaaatggtcgatttcggt
ttctttatttgtaagcaaaagaaattcaactatcgcttttgcgtaaaaacacgccgtttt
actgagaacgcgaagaagaagcgtgaggagaagaaatcatcctcgcgccgtcgtgagcga
cgcacgatgaaaaatgctacacgcaagcgcgccgaaggacgcactcgtcgctactcggat
cgcaagaatgggatcgtacgcaagagttatactagcaacgaagaaaaagatactgttgag
gagtgtaagaaagtgccgcgcaaaggttacttacgtaatcggaatattgaaaaatcggtg
accagctgtaattccgggggggccgggggcggcggtggtggtggcacgtctgcctcaacg
accacaaatagcgctgtttgtgacaaaattttgatgcaatcgagtagtggcgccgacgaa
gagcgttcagaggcaatgtcgaagaaatgcgagattatgggcaagttgtggctgaagaac
gaggtcgagacacttgaggaagagttacggaagaaccccttgaatatcatcatgactccc
ttcttggttgtcgatgcaaaagctttgactgagtataatggcattgtgaaaaatttggtg
aaaaccaaaaaatttattgtgctcataccaaatgcagttttgaatgagttggacgatttg
aaaaagcgcagtgaaaatgcgcgcaatgtcatacgttggctggaacaggagtttaagcat
ggaaatcgtcacttacgcgcccagcgcgataatgagaatttgaccctatcgctgttgaaa
atacccaggaagttggatcgcgacgctagcgtcttcctgcagatagcccaattttgtaac
catctcgttgccaatcattctgatcccaaatctaccgaatttcaaacaaatgttgtcact
tacttgtccggcgattcactttatgagaaacaacgcaatcaaacgaatttcagcttcacg
ggcatattggatgctataccagtacgttacgaacagatatctaatttctatgcgaaattc
aaggccaacaagaaatga
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