Anastrepha obliqua (West Indian fruit fly): 129253194
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Entry
129253194 CDS
T09777
Name
(RefSeq) SKI2 subunit of superkiller complex protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
aoq
Anastrepha obliqua (West Indian fruit fly)
Pathway
aoq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129253194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoq03019
]
129253194
Enzymes [BR:
aoq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129253194
Messenger RNA biogenesis [BR:
aoq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129253194
mRNA degradation factors
3'-5' decay
Ski complex
129253194
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
ResIII
MTR4-like_stalk
Motif
Other DBs
NCBI-GeneID:
129253194
NCBI-ProteinID:
XP_054747445
LinkDB
All DBs
Position
1:complement(99245597..99249908)
Genome browser
AA seq
1192 aa
AA seq
DB search
MDENIQKLQNYIISPELPIHNPLPEIIPRQCDTTRLLHLPKGATSTKLVPRRDFLTGEII
EFVEVDLADVGANACNSTSMRREPGLLMEATRGSAMNFPFWPGGFDEPPREIMKPNIDLD
LGTELLTVPPGFQKGYNFEDSMLKVISGGTVLGESNNVNLLKNLEKDLDVQEWLKLTEQP
TEVDSVTDFNNSAEFKDVEEQIMSADLKPVLEISNTNTKSAFSSEWAEMVDISQPILNFK
EKIPCPAMTYPFELDVFQKQAIIKLEERQYVFVAAHTSAGKTVVAEYAIALSQRDLTRTI
YTSPIKALSNQKYRDFKKTFKDVGLITGDLQIDPTASCLIMTTEILRSMLYCGSEITRDL
EYVIFDEVHYINNPERGHVWEEVIILLPDHVNIIMLSATVPNTLELADWVGSTKKRKVYV
ISTLKRPVPLMHYLYTGCGGKSKDDIYLLVDADGNYLQKNYERAVERKKEMQSKSKGGQS
GGPPAKNFVSAKQDQNMWIGLIDFLKRNQKMPVVAFTLSRNRCDINLQALQSVDLNTARE
KGSVQKFFQQCLQKLKPPDRQLPQVLTLKDSLERGIGVHHSGILPILKEIVEMLFQSGLV
KLLFATETFAMGVNMPARTVIFDSHRKYDGIEVRNLKPGEYIQMAGRAGRRGHDENGTVI
LLCKAQVPPSMDLRSMILGQPEKLQSQFILRYAVILTCLRIESIKVEDIIQFSFKEFNQK
LQIPMQKKQLEVAQDKFSQLPELGEHLQPLCRFYELAQEYITERQRLMKFLLSQPKIAKE
LKVGRVLVVTQGRHYNKLGIILSIKSTPGKDTVYRLLVLQHQFKAIDQKDNFHRSEMYYK
IVSLTPQHKFFQPEGIGGHDVIDVKAVDIVEITKSTIKVDGDVIIRNWEQRQIERFKDTP
PGATVVKAVSELQQLNQNYIDKPETLKFMNISKEINLSQENELAQIRYTEHLWKQLLAIL
PHTNIAGYEQEFATVYERKVLERRIEELKFKNSTKNLSLYPDYCNKLKVLRALNYIDDLD
EVTLKGKVACEMGQNELLITELILCNMFNDLQPAEIAALLSGLVFQGKIQGEPVIPEKLK
KCVKEFEDINDTILAEELRHQTIVESDNRLNFGLLEVVYEWARNKPFAEIMKLTEVQEGI
IVRCIQQLDETLRDVKTAAIRIGNPTLQSKMEDASTAIKRDIVFTASLYTAL
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaatatacaaaaattgcaaaattatattataagtccggaattgccaatacat
aatccgttgccggaaattataccgcgacaatgtgatacaactcgtctgctgcatttaccg
aaaggtgctaccagcaccaaactggtgccacgtcgtgactttctcacaggcgagatcatt
gagtttgttgaggtagatttagcagatgtgggagcgaatgcatgcaattctacctcaatg
cgacgggaacccggactgcttatggaagcaactcgaggttccgctatgaattttcctttc
tggccgggtggattcgacgagccgccacgagaaatcatgaaacctaacattgacttggat
ttaggcacagagctgctgacagtgccaccaggatttcaaaaaggctataattttgaggat
agcatgttgaaagtgatttccggaggtacagtgttaggagagagtaataacgtcaaccta
ttaaaaaacctggaaaaagatctcgatgttcaggaatggcttaaactgacagaacaacct
acggaagtagattctgtaactgattttaataactcagccgaatttaaagatgttgaagag
cagattatgagcgcagacctgaaacccgtacttgaaatatcgaatacaaatacaaaatcg
gcatttagcagcgaatgggctgaaatggtagatatttcacagcctattttgaacttcaaa
gagaaaattccgtgtcccgccatgacctacccatttgagttggatgtatttcagaagcag
gctattattaaattagaagagcgacaatatgtctttgttgcagcgcatacatctgccggt
aaaacagtagtggcagagtatgcaatagccttgtcacaacgggacctaacgcgcacaata
tacacttcacctattaaagcgctgtcaaatcaaaaatatcgagactttaagaaaactttt
aaagacgttggactaataaccggcgatttacaaattgatcccactgcttcgtgccttatt
atgaccacggagattctacggtcaatgctttattgcggtagtgaaataacacgagatctc
gaatacgtaattttcgacgaagtacactatataaacaatcctgagcgcggtcatgtgtgg
gaagaggtgataatattacttccagaccatgtcaatataatcatgttgagcgctactgtg
ccgaacacgttagaattggccgactgggttggcagcaccaaaaaaagaaaagtctatgtg
ataagcacactcaagcgtccagtcccacttatgcattacctttacaccggctgtggtgga
aaaagtaaagacgacatatatttactagtagacgctgatggtaactatctgcagaaaaat
tacgagcgggcggtagagcgcaaaaaagaaatgcaatccaaatcaaagggtggtcagagt
ggtggtccgccagcaaaaaatttcgtaagcgctaagcaagatcaaaacatgtggattggg
ctgatagactttctgaaacgcaatcaaaaaatgcccgtcgtcgcatttacattatcacgc
aatcgctgtgacattaatttacaggctttgcaatcagttgacttaaatactgcccgcgaa
aaaggttctgttcaaaaattctttcagcaatgcttacaaaagcttaaaccaccggaccgt
caattaccacaagttcttacattgaaagactcacttgagcgaggaatcggcgttcaccac
agtgggatacttcccatactaaaggagattgtggagatgctctttcaatctggtttggtt
aaactactcttcgcgacggaaacttttgcaatgggtgtcaatatgcctgctcgtacagtt
atatttgattcgcaccgcaaatatgatggaattgaggtgcgaaatctgaagccgggcgaa
tatatccaaatggccggtcgtgccggtcgtcgaggacatgatgaaaacggcaccgtgata
ttattgtgcaaagcacaggtgccgccttcaatggatctgcgctcaatgatactaggccaa
ccagaaaagctacaatcgcaatttatattgcgttatgccgtcatattaacttgcctgcgc
attgaaagcattaaagtagaggacataattcagttcagtttcaaagagtttaatcaaaag
cttcaaataccaatgcagaaaaagcaactggaagtggcgcaagacaagttttcccaacta
cccgaactgggtgaacacctacagccactatgtcgattctacgaactcgctcaggaatat
atcactgagcggcaacgtctcatgaaatttttgttatcacaacctaaaatagcgaaagaa
ctgaaagttggtagggtacttgtggtcacacaaggcagacactacaacaaattgggtata
atactttctataaaatctactccaggaaaagatacagtatacagattattagtattgcaa
catcagtttaaagcaattgaccagaaggataactttcaccgcagtgaaatgtactacaaa
atcgtgtcattaactccacagcacaagttcttccagcccgagggtatcggcggccatgac
gtaatcgatgtaaaagccgtcgatatagttgagattacgaaaagcaccataaaagttgat
ggcgatgtaataattcgcaattgggagcaacgtcaaatcgaacgtttcaaggatacccca
ccaggtgcaactgtggtgaaggcagtaagtgagttacaacaactcaaccaaaattacata
gacaaaccggaaacgttgaaattcatgaacatctcaaaagagattaatttaagtcaggag
aatgaattagcgcaaattcgctacacggagcatttgtggaagcagcttctcgcaatattg
cctcatacgaacattgctggttatgaacaagaattcgccactgtttatgagcgcaaagtg
ttggaacggcgtatagaggagttgaagtttaaaaattcgactaaaaatctctcactttat
ccggattattgcaataaattgaaggtgttgcgtgcgcttaattacatcgatgatttggac
gaggttaccttaaaaggcaaagttgcttgtgaaatgggacagaacgagctattaataacg
gaattaatactgtgtaatatgttcaatgatctccaacccgcggaaattgcggctctgctt
tctggtctagtatttcaaggaaaaatccaaggagaaccggtgattccggagaagttgaaa
aaatgcgttaaggaattcgaggatatcaacgatacaattttagccgaagaactgcgccat
caaacaatagtagaatcagataatcgtctcaactttggattacttgaagttgtgtacgaa
tgggcccgaaataagccatttgctgaaataatgaaattaactgaagtgcaagaaggtata
atcgtgcgttgcatacaacaattggatgaaactctacgtgacgttaaaactgctgccatt
cgtattggcaatccaacattacagagcaaaatggaagatgcatcaaccgccattaaacga
gacatagtcttcaccgcaagtttgtacaccgcattatga
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