Amycolatopsis orientalis: SD37_02335
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Entry
SD37_02335 CDS
T06703
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aori
Amycolatopsis orientalis
Brite
KEGG Orthology (KO) [BR:
aori00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aori03016
]
SD37_02335
Enzymes [BR:
aori01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SD37_02335
Transfer RNA biogenesis [BR:
aori03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SD37_02335
Prokaryotic type
tRNA splicing ligases
SD37_02335
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
S6PP
Motif
Other DBs
NCBI-ProteinID:
ANN14609
UniProt:
A0A193BR00
LinkDB
All DBs
Position
481934..483124
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AA seq
396 aa
AA seq
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MYTAVEGSRVPIRMWADPTSVEDQAMRQLHNVANLPWVHGVAVMPDVHYGKGATVGSVIA
MRDAVSPAAVGVDIGCGMSAVRTSLTAADLPDDLLKLRRRIESAVPVGFGLHKSPVNPAK
VHGVGGWDAFWKSFGDLHPGVQDLHDRAARQIGSLGGGNHFIEVCLEQGGDDEGRVWLML
HSGSRNIGKELAERHMAVARKLPHNADLPDPDLAVFVAGTPEMQAYRRDLFWAQDYAARN
RATMVALVKQALKDVVPQTTFDDAISCHHNYVAEETYDGVDLLVTRKGAIRAGSGDLGII
PGSMGTGSYIVRGLGNASSFQSASHGAGRRMSRNKAKKLFTADDLAAQTAGVECRKDSGV
VDEIPAAYKDIETVIKAQTDLVEVVAHLKQVVCVKG
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtacacggcggtcgaaggctcgcgggttccgatccggatgtgggcggatcccacctcg
gtcgaagaccaggccatgcgacagctgcacaacgtcgccaacctgccttgggtgcacggg
gtcgcggtcatgcccgacgtccactacggcaagggcgcgacggtcggcagcgtgatcgcg
atgcgcgacgccgtgtccccggccgccgtcggcgtggacatcggctgcgggatgagcgcg
gtgcggacctcgctcaccgccgcggatctgcccgacgacctgctgaagctccgccgccgg
atcgaatcggcggtcccggtcggcttcgggctgcacaagtcgccggtgaacccggcgaag
gtgcacggtgtcggtggctgggacgccttctggaagtccttcggtgacctgcaccccggc
gtccaggatctgcacgaccgcgcggcgcgccagatcgggagcctcggtggcggtaaccac
ttcatcgaggtctgcctcgaacagggcggggacgatgaaggccgcgtgtggctgatgctg
cactccggttcgcgcaacatcggcaaggaactcgcggaacgccatatggccgtcgcgcgg
aagctgccgcacaacgcggatctgccggatccggacctcgcggtgttcgtggcgggcacg
ccggagatgcaggcgtaccggcgggacctgttctgggcgcaggactacgcggcgcgcaac
cgggcgaccatggtcgcgctcgtcaagcaggcgctcaaggacgtcgtcccgcagacgacg
ttcgacgacgcgatcagctgtcaccataattacgtcgccgaagagacctacgacggcgtc
gaccttttggtgacccgcaagggcgcgatccgcgcgggttcgggtgacctcgggatcatc
ccgggcagcatgggtaccggttcgtacatcgtgcgcggcctcgggaacgcgtcgtccttc
cagtccgcgtcgcacggcgcgggccgccggatgtcgcggaacaaggccaagaagctgttc
accgccgacgacctcgccgcgcagaccgccggcgtggaatgccggaaggactccggggtg
gtggacgagatcccggccgcgtacaaggacatcgaaacggtgatcaaggcgcagaccgac
ctcgtcgaggtggtcgcgcatctgaagcaggtcgtctgcgtcaaggggtga
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