Amycolatopsis orientalis: SD37_31160
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Entry
SD37_31160 CDS
T06703
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aori
Amycolatopsis orientalis
Pathway
aori03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aori00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SD37_31160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aori03019
]
SD37_31160
03009 Ribosome biogenesis [BR:
aori03009
]
SD37_31160
Enzymes [BR:
aori01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SD37_31160
Messenger RNA biogenesis [BR:
aori03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SD37_31160
Ribosome biogenesis [BR:
aori03009
]
Prokaryotic type
rRNA processing factors
SD37_31160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
RD3
Motif
Other DBs
NCBI-ProteinID:
ANN19639
UniProt:
A0A193C5B0
LinkDB
All DBs
Position
complement(7168634..7171735)
Genome browser
AA seq
1033 aa
AA seq
DB search
MSNADTPAVTGGNTATPIAGQLAELPPRIRVHALAKLLGSNSRELMAKLGELGETVRSAQ
SSVTRDVAIKLAEALTGGDEPEAAEAAPAAEAPVTETPAAPQPEVKAEEKPQVEPEPAPQ
AEAPSRRVPPALAAPVTPEPPQTTTRRSKAAVHVPVFAAPSPVFLPPEPVAAKPVRRPEP
AFTPADEHEADEDETQTEQADRQDGADDDGDDANGRRRRRRGRRGRGRGKGGDENSAESE
NDDEQPEPPRGRQPRGKDRNDKSEKDAKDTEAEEAESENAEEAAATGYSAEADSDNDGDS
DNGSKRRRRRRRRKGGDGDDTAEATTDDPPNTVVHVRQAKAAETERPARDEVRSVRGSTR
LEAKRQRRRDGREAGRRRAPILSEAEFLARRESVERTMVVAEKGDSTQIGVLEDGVLCEH
FVTSSGTGSIVGNVYLGRVQNVLPSMEAAFIDIGRGRNAVLYAGEVDWDAAGLEGKARKI
EQALSTGDSVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPAGGATGISRKLPENERRRL
KDILKRIVPEDAGVIIRTASEGISEEELDRDVRRLKAQWDVIKEKAEAGNGGKKNSAPVM
LYEEPDLLVKVVRDLFTEDFAKLEIQGDKAWDTIYDYVQHVAPDLADRVKRYTGTGSAFA
DHRIDEQITKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLES
AEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGLVQ
MTRKKIGTGLLEAFSTPCEHCKGRGVVVSTEPQRTAGGGNGHSHGGGSGGSGGGKEQGSR
RSRGRGKGEDQGQNEPAAAKAEAPQAPAQRESVVSAVQAVANAAKAAKGEHAHEVTENVE
GAALNGHAPQAAESAAEPVKEPSDAVSEATVEQAAEAAAEPVSEPVAEAPATELAGEPVT
TSDDEAPAVREEEIAVVGESGPEPEAPEVPVSREETGPEVDVPAPAGRSTTRRRPRRAAS
RPAGPPVKASEQS
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgcggacacacccgccgtcaccggcgggaataccgccacacccatcgcaggc
cagctggccgaactgcctccccggatccgggtgcacgccctggcgaagctcttgggatcc
aacagccgtgaactgatggccaagctcggtgagctcggcgagaccgtccgcagcgcgcag
tccagcgtcacccgcgatgtggccatcaagctcgccgaagccctcaccggcggagacgag
cccgaggcagccgaagcggccccggccgccgaagctcccgtcaccgagactcccgcggct
ccccagcccgaggtcaaggccgaggagaagccccaggtcgagccggagcccgctccgcag
gcggaggcgccttcgcggcgtgtcccgcccgcgctggccgccccggtgaccccggagccg
ccgcagaccacgacccggcggtcgaaggccgccgtgcacgtcccggtcttcgccgcccct
tcgccggtgttcctgccgccggagccggtcgccgcgaagcctgtccgcaggccggagccc
gccttcacgcccgccgacgagcacgaggccgacgaggacgagacgcagaccgagcaggcc
gatcgccaggacggcgccgacgacgacggtgatgacgccaacggccgtcgccgccgccgt
cggggacgtcgcgggcgtggccggggcaagggcggcgacgagaactcggccgagtccgag
aacgacgacgagcagcccgagcccccgcgtggccgtcagccgcgcgggaaggaccggaac
gacaagtccgagaaggacgccaaggacaccgaagccgaagaggccgagtccgagaacgcc
gaagaggcggccgctacgggttattcagcggaggccgattcggacaatgacggcgattca
gacaacggcagcaagcgccgccgtcgccgccgccgtcgcaagggcggggacggcgacgac
accgccgaggccaccaccgacgacccgcccaacacggtcgtccacgtgcgccaggccaag
gccgccgagaccgagcgtcccgccagggacgaggtccgcagcgtgcgtggttcgacccgg
ctcgaggccaagcgccagcgtcgccgggacggccgggaggccggccgccgtcgcgcgccg
atcctgtccgaggccgagttcctcgcccgccgcgagtcggtcgagcgcaccatggtcgtc
gccgagaagggcgactccacccagatcggcgtgctcgaggacggcgtcctgtgcgagcac
ttcgtgacgtcgtcgggcaccggctcgatcgtcggcaacgtctacctcggccgcgtgcag
aacgtgctgccgtcgatggaggccgccttcatcgacatcggccgcggccgcaacgccgtg
ctctacgccggtgaggtcgactgggacgccgccggtctcgagggcaaggcccgcaagatc
gagcaggcgctctccaccggtgactccgtgctggtccaggtcaccaaggacccggtcggg
cacaagggcgcccggctgaccacgcagatctcgctgccgggccggttcctggtgtacgtg
cccgcgggtggcgccaccgggatctcccggaagctcccggagaacgagcgccgccgcctg
aaggacatcctcaagcgcatcgtcccggaagacgccggtgtgatcatccgcaccgcgtcc
gagggcatcagcgaggaggagctggaccgcgacgtccgccgcctcaaggcgcagtgggac
gtcatcaaggagaaggccgaagcgggcaacggcggcaagaagaacagcgcgccggtcatg
ctctacgaagagccggacctgctggtcaaggtcgtgcgcgacctgttcaccgaggacttc
gccaagctggagatccagggcgacaaggcctgggacaccatctacgactacgtccagcac
gtggcgccggacctggccgaccgcgtcaagcggtacacgggaaccggttcggccttcgcc
gaccaccggatcgacgagcagatcaccaaggcgctggatcgcaaggtctggctgccctcg
ggcggctacctggtcatcgaccggaccgaagcgatgacggtcatcgacgtcaacaccggc
aagttcaccggatcgggtggaaacctcgaagagacggtgaccaggaacaacttggagtcg
gcggaggagatcgtccgccagctccggctccgggacatcggcggcatcatcgtcatcgac
ttcatcgacatggtgctcgaatccaaccgtgagctggtgctgcgccgtctgaccgaatgc
ctcggccgcgaccgcacccgtcaccaggtcgccgaggtcacctcgctcggcctggtgcag
atgacccgcaagaagatcggcaccgggctgctcgaagccttctcgacgccgtgtgagcac
tgcaagggccgcggcgtggtcgtctcgaccgagccgcagcgcaccgccggtggcggcaac
ggccacagccacggcggtggcagtggcggtagcgggggcggcaaggagcagggctcccgc
cggtcccgtggccgtggcaagggcgaagaccagggccagaacgagcccgcggctgccaag
gccgaggctccgcaggcccctgcacagcgcgagtcggtcgtttcggcggtccaggccgtc
gccaacgccgcgaaggcggccaagggtgagcacgctcacgaggtcaccgagaacgtcgag
ggtgccgcgctcaacgggcacgcgccgcaggccgccgagtcggccgctgagccggtgaag
gagccttcggacgccgtttccgaggcgaccgtcgagcaggcggccgaggctgctgctgag
ccggtttccgagccggtcgccgaggcacccgcgaccgaactcgccggtgaaccggtgacg
acctcggacgacgaggccccggctgtgcgcgaggaagagatcgccgtcgtcggggaatcg
ggcccggagcccgaggctcccgaggttccggtgtcccgggaggagaccggacccgaggtg
gacgtcccggccccggccggccgctccaccacccgccgtcgtccgcgacgggcggcctcg
cggcccgcgggtcccccggtcaaggcgtcggaacagagctag
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