Amycolatopsis orientalis: SD37_31830
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Entry
SD37_31830 CDS
T06703
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aori
Amycolatopsis orientalis
Pathway
aori03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aori00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SD37_31830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aori03400
]
SD37_31830
Enzymes [BR:
aori01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SD37_31830
DNA repair and recombination proteins [BR:
aori03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SD37_31830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
GH3
Motif
Other DBs
NCBI-ProteinID:
ANN19760
UniProt:
A0A193C5Z4
LinkDB
All DBs
Position
complement(7319385..7320350)
Genome browser
AA seq
321 aa
AA seq
DB search
MPHGTPETAPVIYRRRVPEERITVEVEGRRLGLSNLDKVLYPAHGFTKREVLDYYRRIAP
AMLPHLRDRAATFRRFPDGVDGEPFYEKNVSRHAPEWVRTARLTNRGRRGGEETLDYPVV
GDLPTLMWAANLAALELHVPQWTVGPRGARKSPDLLVFDLDPGPPADVVDCCRVAETLSE
LLTDDGLTVYAKTSGNKGMQLYCPVRTRSDERTSAYAKAVAEELARRSPESVVARMTKAI
RPGRVFIDWSQNNTAKTTIAPYSLRGRAIPTVSTPVTWEEVEACRKAADLLFTAEQVIER
VEELGDLFGDMTEHRAPVPAR
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgcctcacggtaccccggaaacggcgccggtgatctatcgtcgaagggtgcctgaagag
cggataacggtcgaggtcgagggacggcggctggggctgtccaatctggacaaggtgctc
tacccggcgcacggtttcaccaaacgcgaggtcctcgactactaccggcgcatcgccccc
gccatgctcccgcacctgcgcgaccgcgccgccacgttccggcgcttcccggacggcgtc
gacggcgaaccgttctacgagaagaacgtttcccggcacgcacccgagtgggtgcgcacc
gcgcggctgaccaaccgcggccgccggggcggagaggagacgctcgactacccggtggtc
ggcgatctcccgacgctgatgtgggcggccaatctcgccgcgctggagctgcatgttcca
cagtggacggtcggcccgcgcggcgcgcggaaatcacccgatctgctggtgttcgatctc
gatcccggtccgcccgcggacgtcgtcgactgctgccgggtcgccgagacgctcagcgaa
ctgctcaccgacgacggcctgacggtgtacgcgaagaccagcggcaacaagggaatgcag
ctgtactgcccggtgcgcacccggtccgacgaacgcacctccgcgtacgccaaggcggtc
gcggaggaactcgcgcgccggtcaccggaaagcgtggtcgcccggatgacgaaggcgatc
cgccccggccgggtgttcatcgactggagccagaacaacaccgccaagaccaccatcgcg
ccctattccctgcgcgggcgcgccatcccgaccgtgtccacgccggtgacctgggaggag
gtcgaggcctgccgcaaggcggccgatctgctgttcaccgccgagcaggtgatcgaacgc
gtcgaggaactgggtgacctgttcggggacatgaccgagcaccgcgcgcccgtgcccgcc
cggtga
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