Acetobacter orientalis: AcetOri_orf00268
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Entry
AcetOri_orf00268 CDS
T06324
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aot
Acetobacter orientalis
Pathway
aot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AcetOri_orf00268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aot03400
]
AcetOri_orf00268
Enzymes [BR:
aot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AcetOri_orf00268
DNA repair and recombination proteins [BR:
aot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AcetOri_orf00268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
RecG_dom3_C
UB2H
AAA_16
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BBC78518
UniProt:
A0A252B706
LinkDB
All DBs
Position
156590..160060
Genome browser
AA seq
1156 aa
AA seq
DB search
MTAETSVEGRIVPVWGAVEGYDALLLARRAREHNGPVLHIARDDASTARLADFLAYMADD
VETLRFPAWDCLPYDRVSPNPALVAERVATLTRLLEPANGKPRLILTTVAAVVQRVSPRA
TFEGQSITVKQGESLDQELLIELLVANGYTRTDTVMEAGEFATRGGIFDLYPAGAAEPVR
LDLFGDEVENIRAFDPGTQRSTGKLQELTLRPVSEFSLDSESISRFRTGWRDVFGPGAAQ
DPLYEHVSDGRRYPGLEHWLPLFHTSLETLFDYMPKASISLDYQAEDVLKGRLEMIEDHY
QARRQPVREGETPYRALPPHLLYLDKKGWDAAMGRVPVVAFSPFAKPDGAQGMDVGGRPG
KMFSKLVPNAEREQVFKLLGNQVQEWGDVKRRTYVTAWSRGSRERIGTLLREHGVATQSY
ESWKEAQKAKPGTVALLTIGLERGFVAENLAFVSEQDLLGERIGRPPRRRRRADELIAEA
GEITAGDLVVHQDYGIGRYDGLETVSVGVAPHDCLRLLYDGNEKLYLPVENIELLSRFGS
DQAGVPLDKLGGVAWQGRKARMKQRIRDMASDLIRTAAARALKEAPVLAPAEGMWDEFCA
RFPFVETDDQARAIADVLEDMGSGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGGQVAVV
VPTTLLARQHYRTFSARFEGFPLKVAQLSRMVTGKEATAVRKGLSDGSINVVIGTHALLA
KTVQFANLELLIIDEEQHFGVGHKEKLKALRDDVHVLTLSATPLPRTLQLSLSGVREMSL
IATPPTDRLAVRTFIMPFDSVVIREAIQRERFRGGQIFCVAPRIEDLDRLAERLSTIVPD
AKLVQAHGRLSPTELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLGQ
LYQLRGRVGRGKQRGYAYLTWPQTHVLSASSQKRLEVMQTLDTLGAGFTLASHDLDLRGA
GNLLGDQQSGHVREVGIELYQQMLEDAVADLRADASRRRAEDRDWTPNIIVGLPVLIPVD
YVPDLPVRLGLYRRISGIASDAELEAMEAELVDRFGPVPEEVKNLLDIVDLKRLCRQAGV
ERLEAGPKGMVLQFRHNSFRNPQGLVQWMARWKDGTVRLRTDHKMAVVRELTNVQRIDLA
RRVLRDLAKLAQKVPA
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgacagcagaaacgagtgttgagggccgtattgttccggtttggggcgcggtagaaggg
tacgatgcccttttgttagcccgccgtgcacgggagcataacgggccggttctgcatatt
gcgcgtgacgatgcctctaccgcacggttagcagattttctggcttatatggcagacgat
gtggaaaccctgcgttttcccgcatgggactgcctgccctatgaccgcgtttctcctaac
cctgcgttagtggcagagcgtgtggcaacgcttacccgcttgcttgagccagccaatggc
aagccccgccttattttaacaacggttgcggccgttgtgcagcgcgtgtcaccccgtgcc
acgtttgaggggcagtctattaccgttaagcagggtgaaagccttgatcaggaattactg
atcgagcttttggtggccaacggttacacccgtacagacacagtgatggaagcgggtgag
tttgccacccgtggtggtatttttgacctctacccggcaggggcagcagagccagtcagg
ctcgatctgtttggggatgaagttgaaaatattcgtgcgtttgaccccggcacccagcgt
tcaacaggtaagttgcaagagctaacgctgcgcccggtttctgaattttcgctcgatagt
gagagtatttcgcgctttcggactggttggcgcgatgtgtttggccctggtgcagctcaa
gatccgctttatgagcatgtgtctgacgggcggcgctaccccggtctggagcattggctg
ccgcttttccatacgtctttggaaacgctctttgactatatgcccaaagcgtctatctcg
ctcgattatcaggctgaagatgtgctcaagggccggttggaaatgatagaagaccactat
caggcccgccgccagcccgtgcgtgagggtgaaacaccctaccgcgcgctgccaccacat
ttgctctatctggacaaaaaaggctgggatgcggccatgggccgcgtgccagtggttgct
tttagcccgtttgccaagcccgatggtgcccaaggcatggatgtgggcggcaggccgggc
aaaatgttttctaaacttgtgcccaatgccgagcgtgagcaggtatttaagctactaggc
aaccaagtgcaggagtggggcgatgtaaagcgccgcacttacgtaaccgcatggagccgt
ggctcccgcgagcgtattggcacattgctgcgcgagcatggcgtggccacccaaagttac
gaaagctggaaagaggcacaaaaagccaagcccggtacggtagcgcttctgaccattggg
ttggaacgtggctttgtggcggaaaatctggcgtttgtgtctgagcaggatttgctgggt
gaacgtattggccgcccaccacgccgccgccgccgggctgatgaactgattgccgaagcc
ggagaaattaccgccggcgacctggtggtgcaccaagattacggtattggccgctatgat
gggttagagacggtaagcgtaggcgttgccccgcacgactgtttacgcctgctctatgat
ggcaacgaaaagctgtacctacctgttgagaacattgagctgttaagccgctttggctct
gaccaagctggtgtaccgcttgataagctgggtggtgttgcgtggcagggccgtaaagcc
cgcatgaagcagcgcatacgggatatggcgtctgaccttattcgcacggctgcggcccgt
gcgttgaaggaggcccccgtattagccccggccgaaggtatgtgggacgagttttgtgcg
cgtttcccgtttgtggaaacagatgaccaagcccgtgccattgccgatgtgctggaagat
atgggttcaggccgccccatggacaggcttgtgtgtggggatgtgggctttggcaaaacc
gaggttgccctacgggcggcctttgtagctgccatgtctggtgggcaggtggctgttgtg
gtgcccaccacattgttggcccgccagcattaccgcaccttctctgcgcggtttgaaggc
tttccgcttaaagtggcacagctttcgcgcatggtaacgggcaaagaggccacggctgtg
cggaaagggctcagtgatggctctattaatgtggtaataggtacgcacgcactgctggct
aaaacggtacagtttgccaaccttgaattgctgattattgacgaagaacagcattttggt
gttgggcacaaagaaaagctgaaagccctgcgtgatgatgtgcacgtgctcaccctttca
gctacgccgctcccccgcactttgcagctttcgttgtctggcgtacgggaaatgagcctt
attgccaccccgcccacagacaggctggcagtgcgcacctttattatgccctttgatagc
gtggtaatacgcgaagccattcagcgtgagcgctttagaggtgggcagattttctgtgtg
gctccacgcattgaagaccttgaccgtttggcagagcgcctaagcaccattgtgccagat
gccaagctggtgcaggcccatggccgcttaagccccactgagcttgagcgggttatgact
gagttttctgatggtaaatacgatattctgctttctaccaatattgtagaaagcgggttg
gatatgcctgcggtaaacacgcttattatacaccgggcagatatgtttggccttgggcag
ttgtaccagttgcgtgggcgcgttgggcgcggcaagcagcgggggtatgcgtaccttacg
tggccgcaaacgcatgtgctttcggcttcttcgcaaaagcggcttgaggttatgcaaacg
ctcgatacgttgggggcaggctttacgctggcttcgcacgatcttgacctgcgtggggcc
ggtaatttgttgggcgaccaacagtctggccatgtgcgtgaggttggtattgagctgtac
cagcaaatgctggaagacgccgtggcagacctgcgggccgatgccagccggaggcgcgca
gaagatagagactggacacccaacattattgtgggcctgccagtgcttataccggttgac
tatgtaccagacctgcctgtgcgtttggggctataccgccgtattagcggcatagcctct
gatgccgagctagaagctatggaagccgagctggtagaccgctttggccccgtgcctgaa
gaggtgaaaaacctgctggatattgtggatttaaagcgcctgtgccgccaagccggggta
gagcggttggaggccgggccaaaaggtatggtgcttcagtttaggcacaatagtttccgt
aacccgcaaggcttggtgcaatggatggcccgttggaaagatggcactgtgcgcctgcgt
accgaccacaaaatggccgtagtgcgagagcttacaaatgtgcagcgtattgacctggca
aggcgtgttttgcgcgaccttgcaaaactggcgcaaaaggtacccgcttag
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