Acetobacter orientalis: AcetOri_orf01532
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Entry
AcetOri_orf01532 CDS
T06324
Name
(GenBank) RNB domain-containing protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aot
Acetobacter orientalis
Pathway
aot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AcetOri_orf01532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aot03019
]
AcetOri_orf01532
03016 Transfer RNA biogenesis [BR:
aot03016
]
AcetOri_orf01532
Enzymes [BR:
aot01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AcetOri_orf01532
Messenger RNA biogenesis [BR:
aot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AcetOri_orf01532
Transfer RNA biogenesis [BR:
aot03016
]
Prokaryotic type
tRNA degradation factors
AcetOri_orf01532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
CSD2
Motif
Other DBs
NCBI-ProteinID:
BBC79378
UniProt:
A0A2Z5ZFR5
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All DBs
Position
956410..958077
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AA seq
555 aa
AA seq
DB search
MLTQGSRQLPVCITALTAQPDGACIATLQPCDSRIDLPLQARLPSHIPQNPVWCVGCVAL
AELTPATRDTSATVQLVSNLGSPTAPGMAVTLSILTHALPSIFSKEAEQQAQQAATKPLE
AELAHRRDLRALPLITIDDETAEDFDDAIWAERTDTGFHLIVAIADVASYVPAGSTLDRE
ARLRGNSVYLPGHCLPMLPASLSAGACSLKEHQDRLCVYVEFNVSHTGTLVAGTLGRGIM
RSAARLTYKQVQHHLDQSPAPPSAALPATLPPDLLPSLAATAAALQSAAIARGETQQEEY
GPEPHTITFDAAGTPIAFTPRPLLAAHNLVARSMIAANSFAAQTLQQKGAPGLFRIHPEA
GSKHTNRPSNARYALKPARHQGLALDTYTHFTSPIRRYADLVTHRALLATFSQTMQNPKA
AAPLSISGPEGCETLHALTEHLHFTERRAASAAQMCQNRFAALYLSPACGTVLQAYVART
TRLGLSLTLTNTGTPSFLFRNAFADDSGMYDDSHPTRTPVPFGASLQKGDVLSVVLKATD
PARGTLTLAVPPHAH
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgctaacacaaggcagcaggcaactacctgtttgtattacggcacttacagcgcagcct
gatggagcctgtattgcaaccctgcaaccctgcgatagccgtatagacctgcccctacag
gcccgcttgcccagccacataccccaaaacccagtatggtgtgttgggtgcgtggccttg
gcagaacttacccctgccacacgagatacatctgccacagtgcaactggttagcaacctt
ggcagccccactgcgccgggtatggctgtcacgctcagtattttaacgcatgctttgccc
agcattttttcaaaagaagcagagcaacaagcccaacaggcagcaaccaagccgcttgag
gcagagcttgcccacaggcgcgacctgcgagcgctccctctcattacgattgatgacgaa
acagcagaagactttgatgacgccatctgggccgaacgcacagacacgggctttcacctt
attgtcgctattgcagatgtcgcaagctatgtgccagcaggctcaacgctggatcgggag
gcccggctacggggcaactccgtttacctaccggggcattgcctccccatgctgcccgcc
agcctttctgccggggcgtgctctcttaaagagcatcaagaccgtctatgcgtttatgtt
gagttcaacgtaagccacacaggcacgcttgtggctggcacacttggccgcggtattatg
cgtagcgcggcccgccttacctataaacaggtgcaacaccacctagaccaaagcccagcc
ccacctagcgccgcactgccagcaacactcccgccagacttgctgcctagcttggcagcc
acagccgcagccctacagagtgctgccatagcacggggtgaaacgcagcaagaagagtac
ggcccagagccccacaccattacgtttgatgccgcaggcacccccattgcctttacccca
cgccccttattggcagcgcacaaccttgtggcccggtccatgattgccgccaattctttt
gcagcgcaaacactccagcaaaagggggcaccgggcctatttcgtattcacccagaagcc
ggtagcaagcacaccaaccgcccttcaaacgcgcgctatgcactcaagcctgcacggcac
caagggcttgcgttagatacttacacacactttaccagccccattcgccgctatgctgat
ctggtaacacaccgtgcccttctcgccacattttctcaaacaatgcagaaccccaaggcc
gccgccccgttaagtatatctggccccgagggatgtgaaacgttgcacgcactgacggaa
cacctgcattttaccgaacgccgcgcagcgtctgccgcacaaatgtgccagaaccgcttt
gcagccctttaccttagcccagcctgcggcacggtgttacaggcgtatgttgccagaaca
acacggctcggccttagcctgacattgacgaatacgggaactccgtctttccttttccgc
aacgcctttgcggatgattcaggaatgtatgacgactcgcacccaacacgcaccccggtc
ccttttggagcgtcgcttcaaaagggtgatgtgctgtctgtggtgctaaaagcaacagac
cccgcgcgcggtactcttactttggctgtgccccctcatgcgcactaa
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