Actinoplanes oblitus: ACTOB_000312
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Entry
ACTOB_000312 CDS
T09687
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aou
Actinoplanes oblitus
Pathway
aou03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACTOB_000312 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aou03400
]
ACTOB_000312 (ligD)
Enzymes [BR:
aou01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACTOB_000312 (ligD)
DNA repair and recombination proteins [BR:
aou03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACTOB_000312 (ligD)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
WIM96841
LinkDB
All DBs
Position
complement(340586..341524)
Genome browser
AA seq
312 aa
AA seq
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MPGSPLSPMLATAGRLPVGADWSYEFKWDGVRVLALFSGGPPDLFARSGAVVTAAYPEIA
ELHLPEGTLLDGEMVCFDAAGRPSFTALAERMHVRDPNRAARLAATLPATYLIFDLLYLD
GMDYTGLPYLARRERLEELDLAGPRWMVPPSFGDGPATEAAARENHLEGVLAKRSDSVYL
PGQRSPDWIKVKFDRTGDYVIGGWRPGARKLGGLLIGVPTPDGLAFRGRVGGGIGAVAEK
ELLARLTPLATPDSPFASGAVPRADAKGAMWVRPELVAEIRYGNQTPDRRLRFPRFLRLR
DDKRPAECSDDA
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
gtgccgggatcaccgctgtccccgatgctcgcgaccgcgggccggcttcccgtgggcgcg
gactggagctacgaattcaagtgggacggagtccgggttctcgcgctgttcagcggcggg
ccgccggacctgttcgcccgctccggcgccgtggtgaccgccgcctacccggagatcgcc
gagctgcacctgcccgagggcaccctgctggacggcgagatggtctgcttcgacgcggcc
gggcgcccctcgttcaccgccctcgccgagcggatgcacgtccgcgaccccaaccgggcg
gcccggctcgccgccaccctgccggccacctatctgatcttcgacctgctctatctcgac
ggcatggactacaccgggctgccctatctcgcccgccgcgagcgcctggaggagctggat
ctggccgggccgcgctggatggtgccgccgtcgttcggcgacggtccggccaccgaggcc
gccgcgcgggagaaccacctcgagggcgtgctggccaagcgctccgactcggtctacctg
cccggccagcgctcccccgactggataaaggtcaagttcgaccggaccggtgactacgtg
atcggcggctggcgacccggcgcccgcaagctgggcggcctgctgatcggcgtgccgacc
ccggacggcctggccttccgcggtcgggtgggcggtgggatcggcgccgtcgccgagaag
gagctgctggcgcggctgacgccgctcgccaccccggattcgccgttcgcttccggagcg
gtgccccgcgcggatgccaaaggagcgatgtgggtacgcccggagctggtcgccgagatc
cgttacggcaaccagacgcccgaccgtcgcctccggttcccgcgctttctccggttgcgt
gacgacaagagacccgcggagtgttccgacgatgcctga
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