Actinoplanes oblitus: ACTOB_004340
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Entry
ACTOB_004340 CDS
T09687
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
aou
Actinoplanes oblitus
Brite
KEGG Orthology (KO) [BR:
aou00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aou03021
]
ACTOB_004340
Transcription machinery [BR:
aou03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACTOB_004340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_Crp_2
DUF134
MarR
HTH_3
HTH_23
HTH_10
DUF7343
Sigma70_ECF
NirdL-like_HTH
HTH_31
HTH_24
HTH_37
LacI
HTH_Tnp_4
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
WIN00625
LinkDB
All DBs
Position
4856525..4857319
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AA seq
264 aa
AA seq
DB search
MTVLVDTAVETDASTSTDRASELINALAALPAGHPSRPELRDRAIEAWLPLARHLSNRYA
NRGEPRDDLYQVAVMGLIKAVDRFEADRGVDFAGFAIPTVIGELKRHFRDKTWSVRVPRR
LQELRLAITSANNTLTHDLGRAPTVTDIAEYLKITEDEVIEGLEGARAYNSTSLSTPMTD
SGTELGDTLGGMDAGFEEAELRVALGPAMATLDEREQKIISLRFYGNLTQSQIAEQVGVS
QMHVSRLLTKALAKLRKQLDGMTV
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtcctggttgacaccgccgtcgagaccgatgcttcgaccagcacggaccgggcc
agcgaactgatcaacgcgctggcggccctgccggccgggcacccgtcccgccccgagctg
cgtgatcgcgcgatcgaggcatggctgccgctggcccgccacctgtccaaccggtacgcc
aaccgcggcgagccgcgcgacgacctctaccaggtcgcggtgatggggctgatcaaggcg
gtcgaccggttcgaggccgaccggggcgtcgacttcgccgggttcgccatccccaccgtg
atcggcgagctgaagcgtcacttccgggacaagacctggtcggtgcgggtgccgcggcgg
ctgcaggagcttcgcctggcgatcaccagcgccaacaacacgctcacccacgacctgggc
cgcgcgccgacggtgaccgacatcgccgagtacctcaagatcactgaggacgaggtcatc
gagggcctggagggtgcccgggcctacaactcgacgagcctgtcgacgccgatgaccgac
agcggcaccgagctcggcgacaccctcggcgggatggacgccggtttcgaggaggccgag
ctgcgggtcgccctgggcccggcgatggccaccctggacgagcgcgagcagaagatcatc
agcctgcggttctacggcaacctcacccagtcgcagatcgccgagcaggtcggtgtgtcg
cagatgcacgtgtcgcggctgctcaccaaggcgctcgccaagctgcgcaagcagctcgac
ggcatgaccgtctga
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