Actinoplanes oblitus: ACTOB_005860
Help
Entry
ACTOB_005860 CDS
T09687
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
aou
Actinoplanes oblitus
Brite
KEGG Orthology (KO) [BR:
aou00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aou03019
]
ACTOB_005860 (hrpA)
Enzymes [BR:
aou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ACTOB_005860 (hrpA)
Messenger RNA biogenesis [BR:
aou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ACTOB_005860 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
NACHT
Sugar-bind
T2SSE
nSTAND3
ABC_tran
AAA_30
SLFN-g3_helicase
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WIM93867
LinkDB
All DBs
Position
complement(6488707..6492618)
Genome browser
AA seq
1303 aa
AA seq
DB search
MSISELRSRISELLPRDEHRLRRRLDGTRRIRDDDARSAALAEIAAEVERARLRLETRLG
AVPPISYPEALPVSARKDDIAAAIRDHQVVVVAGETGSGKTTQLPKICLELGRGVRGQIG
HTQPRRIAARTVAERIAEELDRPLGSTVGYKVRFTDQVGEDTLVKVMTDGILLAEIQTDR
MLRRYDTLIIDEAHERSLNIDFILGYLRDLLPKRPDLKIVITSATIETQRFAEHFADAEG
KPAPVIEVSGRTYPVEVRYRPLVTTTLIDEDDDEVREEPIDQIEGIAAAVDELPTDGDIL
VFMSGEREIRDTADALTRKDLRNTEVVPLYGRLSAAEQHKVFERHTGRRIVLATNVAETS
LTVPGIRYVIDPGTARISRYSHRLKVQRLPIEPVSQASANQRKGRCGRTSDGICVRLYSE
EDFEGRPEFTEPEILRTNLASVILQMTNLGLGDLAKFPFIDPPDRRNITDGIKLLEELGA
LDKGDLTPLGRQLAQLPVDPRLARMVIEADRQECVAEVMVIAAALSIQDPRERPADKKQQ
ADEKHARFVDKESDFFTYLNLWRYLREKQRELSGNQFRRLCRSEFLNYLRVREWQDIYTQ
LRQVARTLKLSLTEDWEAGVAPQPVHTALLAGLLSHIGLKDTDKREYLGARGAKFAIFPG
SVLFKRQPRWVMSAELVETSRLWARVNARIEPEWAEKLAPHLVKRSYSEPHWDRQLGAVM
AFEKVTLYGLPIVPRRRVGYSKVDPEVSRELFIRHALVEGDWETHHKFFEANRRLLRQIA
EIENRARRRDIAVDDEVVFSLYDAKIPAEVVSSRHFDGWWKKARRENPDLLTFTREELVN
AGRDTVDPNAFPDAWLAGGVKLPLRYEFDPGKHADGVTVRLPLDLINKVDAEDFGWSVPG
FRKDVVIALIRALPKAMRTSFVPVPDWAEAVLDRIPARRGPLPDAVGNELRRLTGTIVPR
DAWRPDQVPDHLRMNFRIVNESGEVVAEGRDLEVLRRELAPKVRATISRAAGDLERTGIT
TNDFGALPHRVEQVRGGYRVNVWPALVDEGASVGVKVFETEAEQRIAMRAGTRRLLLLTL
PPAARFLQGRLDNRAKLELSRANPYRSIADLLDDCAGAAVDKLVADAGGPVWSSVEFASL
RDTVREDLVDAVANVVTQVQAVLATAYEVDQRVRQVKDPMLLPALTDIRQQLKGLVYPGF
VTETGWRQLHHMPRYLRGISYRLDRLGGSAGRDRQLITAIQEIEAEYRELKAEAAPGGPA
AEGLREIRWMIEELRINLFAQTLGTAYPVSDKRIFKAMDALPL
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatttctgaactacgcagccggatctccgagctccttccccgtgacgaacaccgg
ctgcggcgccgcctcgacggaacgcgtcggatccgcgacgacgacgcccggtccgccgcc
ctcgccgagatcgccgccgaggtcgagagggcccggctcagactcgagacgcggctcggc
gcggtcccgccgatcagctatcccgaggcgctgccggtcagcgcccgcaaggacgacatc
gccgcggcgatccgcgaccaccaggtcgtcgtggtcgccggcgagaccggctcgggcaag
accacccagctgccgaagatctgcctggagctgggtcgcggcgtgcgcgggcagatcggc
cacacccagccgcggcggatcgccgcccggacggtggccgagcggatcgccgaggagctg
gaccggccgctcggctcgacggtcggttacaaggtgcggttcaccgaccaggtcggcgag
gacaccctggtcaaggtgatgaccgacggtatcctgctggccgagatccagaccgaccgg
atgctccggcgatacgacacgctgatcatcgacgaggcgcacgagcgcagcctcaacatc
gacttcatcctcggctacctgcgcgacctgctgccgaaacggcccgacctcaagatcgtg
atcacctcggcgaccatcgagacgcagcggttcgccgagcacttcgcggacgccgagggc
aaaccggccccggtgatcgaggtgtccggccggacgtacccggtcgaggtccgctaccgc
ccgctggtcaccaccaccctgatcgacgaggacgatgatgaggtccgcgaggagccgatc
gaccagatcgagggcatcgcggcggccgtcgacgagctgcccaccgacggcgacatcctg
gtcttcatgtccggcgagcgggagatccgggacaccgccgacgcgctgaccaggaaggac
ctgcgcaacaccgaggtggtcccgctctacggccggctgagcgccgccgagcagcacaag
gtcttcgaacgccacaccggccgccggatcgtgctggccaccaacgtggccgagacctcg
ctgacggtgcccggcatccggtacgtgatcgacccgggcaccgcccggatcagcaggtac
tcgcaccggctcaaggtgcaacggctgcccatcgagccggtctcccaggccagcgccaac
cagcggaagggccggtgcggccggacctcggacggcatctgcgtccggctctactcggag
gaggacttcgagggccggccggagttcaccgaaccggagatcctgcggacgaacctcgcg
tcggtgatcctccagatgaccaacctcgggctcggtgacctggccaagttcccgttcatc
gacccgccggaccggcgcaacatcaccgacggcatcaagctgctggaggagctcggcgcc
ctcgacaagggcgatctcaccccgctcggccgccagctcgcccagctgccggtcgacccg
cggctggcccgcatggtcatcgaggcggacaggcaggagtgcgtcgccgaggtgatggtg
atcgccgcggcgctgtcgatccaggacccgcgcgagcgcccggccgacaagaagcagcag
gccgacgagaaacacgcccggttcgtggacaaggaatcggacttcttcacctacctcaac
ctgtggcgctacctgcgggagaaacagcgggagctgtccggcaaccagttccgccggctg
tgccgctcggagttcctgaactatctgcgcgtgcgggagtggcaggacatctacacgcag
ctgcggcaggtcgcgcgtaccctcaagctctcgctcaccgaggactgggaagcgggagtc
gcgccgcaaccagtgcacaccgccctcctcgcgggtctgctcagccacatcgggctcaag
gacaccgacaagcgcgaatatctcggggcgcggggcgccaagttcgcgatcttcccgggc
tcggtgctgttcaagcggcagccgcgctgggtgatgtcagccgagctggtcgagaccagc
cggttgtgggcccgggtgaacgcccggatcgagccggagtgggccgagaaactcgccccc
cacctggtcaaacgctcctacagcgaaccgcactgggatcgccagctgggtgccgtgatg
gccttcgagaaggtcacgctctacgggctgccgatcgtgccgcgccgccgggtggggtac
agcaaggtcgacccggaggtctcgcgcgagctgttcatcaggcacgccctggtcgagggg
gactgggagacccaccacaagttcttcgaggcgaaccggcggctgctgcggcagatcgcc
gagatcgagaaccgggcgcggcggcgggacatcgccgtcgacgacgaggtggtcttctcg
ctctacgacgcgaagatccccgccgaggtggtctcgtcccggcatttcgacgggtggtgg
aaaaaggcccgccgggagaacccggacctgctcaccttcacccgcgaggagctggtcaac
gcgggccgggacacggtcgacccgaacgcgttcccggacgcctggctcgcgggcggggtc
aagctgccgctgcgctacgagttcgaccccggcaagcacgccgacggcgtcaccgtacgg
ctcccgctcgacctgatcaacaaggtcgacgcggaggacttcggctggtccgtccccggc
ttccgcaaggacgtcgtgatcgccctgatccgcgccctccccaaggccatgcgcaccagc
ttcgtgccggtcccggactgggccgaggccgtcctcgaccggattccggcccgccgcggc
ccgctgcccgacgcggtcggcaacgagctgcgccggctcaccggcaccatcgtgccgcgc
gacgcgtggcggcccgaccaggtaccggaccacctgcggatgaacttccggatcgtcaac
gagtccggcgaggtcgtcgccgagggccgcgacctggaggtgctgcgccgcgagctggcg
ccgaaggtgcgggccaccatctcccgggcggccggcgacctggaacgcaccggcatcacc
accaacgacttcggcgccctcccgcaccgggtcgagcaggtacgcggcggctaccgggtg
aacgtctggccggccctggtcgacgagggcgccagcgtcggcgtgaaggtgttcgagacc
gaggccgagcagcgcatcgcgatgcgggccggcacccggcggctgctgctgctcacgctg
ccgccggccgcccggttcctgcaggggcgcctggacaaccgggcgaaactggagctgtcc
cgggccaacccgtaccggtcgatcgccgacctgctggacgactgcgcgggcgcggcggtg
gacaagctggtcgccgacgccggtgggccggtctggtcgtcggtcgagttcgcgtcgctg
cgcgacacggtgcgcgaggacctggtcgacgcggtggcgaacgtggtcacccaggtgcag
gcggtgctggccacggcgtacgaggtggaccagcgggtgcgccaggtcaaggacccgatg
ctgctgcccgcgctcaccgacatccggcagcagctcaagggcctggtctacccgggcttc
gtgaccgagaccggctggcggcagctgcaccacatgccccgctacctgcgcggcatcagc
taccggctggaccgcctcggcgggtccgcggggcgcgaccggcagctgatcaccgcaatc
caggagatcgaggcggagtaccgcgagctcaaggcggaggcggccccgggcgggccggcc
gcggaagggctgcgggagatccggtggatgatcgaggagctgcggatcaacctcttcgcg
cagaccctggggaccgcctaccccgtctctgacaagcgcatattcaaggccatggacgct
ctgccgctctga
DBGET
integrated database retrieval system
