Actinoplanes oblitus: ACTOB_006370
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Entry
ACTOB_006370 CDS
T09687
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aou
Actinoplanes oblitus
Pathway
aou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACTOB_006370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aou03019
]
ACTOB_006370
03009 Ribosome biogenesis [BR:
aou03009
]
ACTOB_006370
Enzymes [BR:
aou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACTOB_006370
Messenger RNA biogenesis [BR:
aou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACTOB_006370
Ribosome biogenesis [BR:
aou03009
]
Prokaryotic type
rRNA helicases
ACTOB_006370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
WSD
GntR
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WIM94351
LinkDB
All DBs
Position
7053623..7055326
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AA seq
567 aa
AA seq
DB search
MDETAATSTDAGFAELGLRPELLRALADLGYEEPTPIQREAIAPLVAGHDLVGQAATGTG
KTAAFALPLLQRLTAGEADGPVALVLVPTRELAEQVSQAVHRYGRDLNVRVLPVYGGQPI
QRQLQVLRRGVDVVVGTPGRILDHIERETLRLDAIRTVVLDEADEMLDMGFAEDIEAILA
ETPEERQTVLFSATMPPRIDAIARRHLREPLRIRMGRETAEADALPTVRQSAYLVARAHK
AAALGRVLDVEAPTAAIVFCRTREEVEEVTESLNGRGFRAEALHGGLSQDQRDRVMGRLR
AGTTELLVATDVAARGLDVEQLTHVINFNVPSAPEAYVHRIGRVGRAGRTGAAITLAEPR
EQRMLKAIERLTGQRIVLEKLPTVTDLRARRLEVVRTTVQEALDADDLDRFRSVLASLTD
EADLEQIALVTLKLLHEANGGDVDEPEIPSIAPQREREFDNRAARRNGPGADRNGDRGPG
RGRSGGGAVTRVFVGLGRRAGLRPQDLVGAIAGEAGLPARDIGAIQITDRFSLVEVPEAD
ADRVIRALSHSTIRGRRPTVRRDRPHR
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaaccgccgctaccagcaccgatgcaggattcgccgagctggggctgcgtccc
gaactgctgcgcgcgctcgctgatctcgggtacgaggagcccacgccgatccagcgggag
gcgatcgcgccgctcgtggccgggcatgacctggtggggcaggcggcgaccggcacggga
aagacggcggcgttcgccctgcccctgctgcagcggctgacggccggcgaggcggacggg
ccggtggcgctggtgctggtgccgacccgggagctcgccgagcaggtgtcgcaggcggtg
caccgctacgggcgggacctgaacgtgcgggtgctgccggtctacggcgggcagccgatc
cagcgccagctccaggtgctgcggcgcggcgtggatgtggtggtcggcacccccggccgg
atcctggaccacatcgagcgggagacgctgcggctcgacgcgatccgtaccgtcgtgctg
gacgaggccgacgagatgctcgacatggggttcgccgaggacatcgaggcgatcctggcg
gagacgcccgaggagcggcagaccgtgctgttctcggccaccatgccgccgcggatcgac
gcgatcgcccggcgtcacctgcgggaaccgctgcggatccggatggggcgggagaccgcc
gaggccgacgcgctgccgacggtacgccagagcgcctacctggtggcccgcgcgcacaag
gcggcagctctcggccgggtgctcgacgtggaggcgccgaccgcggcgatcgtcttctgc
cgcacccgcgaggaggtcgaggaggtcaccgagagcctgaacggccggggtttccgcgcc
gaggccctgcacggcgggctgagccaggaccagcgggaccgggtgatgggccgcctccgc
gcgggcaccaccgagctgctggtcgcgacggatgtggcagctcgcgggctggacgtcgag
cagctgacccacgtcatcaacttcaacgtgccgtcggccccggaggcgtacgtgcaccgc
atcggccgggtgggccgcgccggccggaccggtgccgccatcaccctggccgagccccgc
gagcagcggatgctgaaggccatcgagcggttgaccggtcagcggatcgtactggaaaag
ctcccgaccgtgaccgacctgcgggcccggcgcctggaagtggtccgcaccaccgtccaa
gaggccctggacgccgacgacctggaccgtttccgatcggtgctggcctccctcaccgac
gaggccgacctggaacagatcgcgctggtcaccctgaagctgctgcacgaggcgaacggc
ggcgacgtcgacgagccggagatcccgtcgatcgcgccgcagcgtgagcgcgagttcgac
aatcgcgccgcgcgccgcaacggtcccggcgccgaccgcaacggcgaccgcggtccgggc
cgaggccggtccgggggcggcgcggtgacccgcgtcttcgtcggcctgggccggcgtgcc
gggctgcgcccgcaggacctggtcggcgcgatcgccggcgaggcgggcctgccggcgcgg
gacatcggcgccatccagatcactgaccgtttctcgctggtggaggtccccgaggccgac
gccgaccgggtgatccgcgcgctgagccacagcaccatccggggccgccgcccgacggtc
cgccgcgaccgcccccaccgctga
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