Azospirillum oryzae: HUE56_09850
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Entry
HUE56_09850 CDS
T06782
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
aoz
Azospirillum oryzae
Pathway
aoz02020
Two-component system
aoz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aoz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HUE56_09850 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HUE56_09850 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoz03021
]
HUE56_09850 (rpoN)
Transcription machinery [BR:
aoz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HUE56_09850 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Arg_repressor
HTH_38
LacI
Motif
Other DBs
NCBI-ProteinID:
QKS50839
UniProt:
A0A6N1AHX9
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All DBs
Position
complement(200292..201911)
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AA seq
539 aa
AA seq
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MALAQRLDLRQAQTLVMTPQLQQAIKLLQLSNIELSDFVDREIEQNPLLERDSGPSDGGS
DPVVGDGAGGEAPGGLDGPGGMEANGLSIDGLNGRDDGPALAPTDGRTRDTVEMTSSDTM
ASSSEAPLDTDFENVYGDDRFSDGSDGGSEVYGSYGERGGRSGFDDDDSNLEATLTSEKN
LRDHLTEQLKIDLPDLGDQLIGLALIDMLDEAGWLVGFDARAMAEQLGCDVERVERVLAA
CQRFDPPGIFARSLKECLAIQLREKNRLDPAMAALLDNLELLAARNLPAIMKVCGVDAED
VADMVVDIRKLNPKPALAFDHTPAQLVTPDILMRANPGGGWLIDLNPDTLPRVLVNHRYF
ARISDSARNKADKEYISERFQSANWLVKSLHQRATTILKVASEIIRQQDAFFIHGVSHLR
PLILRDIAEAIGMHESTVSRVTTNKFMATPRGVFELKYFFTSAIQGADGQASHSAEAVRH
RIKTMIDAEKPDDVLSDDKLVEILRAEGIDIARRTVAKYREAMKIPSSVQRRRAKMSRM
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttgctcaacgtctcgaccttcgacaagcccagaccctggtgatgacgccgcag
ctgcagcaggcgatcaagctgctgcagctgtcgaacatcgaactgtcggacttcgtcgac
cgcgagatcgagcagaacccgctgctggagcgcgacagcggccccagcgacggcggcagc
gaccccgttgtcggcgacggtgccggcggcgaggcgccgggcgggctggacggccccggc
ggcatggaggcgaacggcctcagcatcgacgggctgaacggccgcgacgacggcccggcc
ctggcgccgaccgacgggcgcacccgcgacaccgtggagatgacctcgtcggacacgatg
gcttcctcgtcggaggcgccgctcgacaccgatttcgagaatgtctatggcgacgaccgc
ttttccgacggctcggacggcggcagcgaggtctacggctcctatggcgagcgcggcggc
cgcagcggcttcgacgatgacgacagcaacctcgaagcgacgctgaccagcgaaaagaac
ctgcgcgaccacctgaccgaacagctgaagatcgacctgcccgacctcggtgaccaactg
atcgggctggccctgatcgacatgctggacgaggctggctggctggtcgggttcgacgcc
cgggcgatggccgaacagctgggctgcgacgtggagcgggtggagcgggtgctggccgcc
tgccagcgcttcgatccgcccggcatcttcgcgcggtcgctgaaggaatgcctggcgatc
cagctgcgcgagaagaaccggctcgacccggcgatggcggcgctgctcgacaatctggag
cttctggccgcgcgcaacctgccggccatcatgaaggtctgcggcgtcgatgccgaggac
gtcgccgacatggtcgtcgacatccgcaagctgaacccgaagccggcactggccttcgac
cacacgccggcccagctggtcacccccgacatcctgatgcgcgccaatcccggcggcggc
tggctgatcgacctgaaccccgacacgttgccgcgggtgctggtcaaccatcgctatttc
gcccgcatctccgacagcgcccgcaacaaggccgacaaggaatacatctccgagcggttc
cagtcggcgaactggctggtcaagtcgctgcaccagcgcgccaccaccatcctgaaggtg
gcgagcgagatcatccgccagcaggacgccttcttcatccatggcgtctcgcatcttcgg
ccgctgatcctgcgcgacatcgccgaggccatcggcatgcatgagagcaccgtcagtcgc
gtcaccaccaacaagttcatggcgactccgcgcggcgtcttcgagctgaaatacttcttc
acctccgccatccagggtgcggacggtcaggcctcccattccgcggaagcggttcggcac
cgcatcaagaccatgatcgatgcggaaaagccggacgacgtgctttcggacgacaaactg
gtggagattctccgtgcggaagggatcgacattgcgcggcggacggtcgcgaagtatcgt
gaagcgatgaaaataccgtcatcggtgcagcgacgacgtgccaagatgtcacgcatgtag
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