Azospirillum oryzae: HUE56_18995
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Entry
HUE56_18995 CDS
T06782
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
aoz
Azospirillum oryzae
Pathway
aoz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aoz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HUE56_18995 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoz03021
]
HUE56_18995 (rpoD)
Transcription machinery [BR:
aoz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HUE56_18995 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF2935
Motif
Other DBs
NCBI-ProteinID:
QKS52464
UniProt:
A0A6N1AT82
LinkDB
All DBs
Position
complement(2103402..2105414)
Genome browser
AA seq
670 aa
AA seq
DB search
MATKAANSVEVSETREESADGPLMDGMGLAVKKMIARGKERGYVTYDELNAALPQDSSSS
EQIEDTMAMLSEMGINIVESEEQDSENSGEAGGEGEGRSSGNLDDDDIGRTDDPVRMYLR
EMGSVELLSREGEIAIAKRIEAGREMMIGAICESPLTIRAILEWHDSLMEGKMLLRDIID
LDATYGGGPDGEEIPEGLAGVVEAVGPAGTAGAAPAAEAPADEEGDEPRPPRAEGEGDEG
EEGDEGENSLSLSAMEAALKPQVIETFENIKATYDKLHKLHEARMGAMQRGEDVGKQTDK
KYDKLKTEMVELMNTVRLNNQRIEQLVEQLYGLNRKLTGFEGRLLRMATECRVKREDFLN
QYFGHELDPNWLERIRGLNPKTWGKFAEKYDSDIRKTREAISNVADEARLPINEFRRIVS
TVQKGEKEASRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR
GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEEL
AERLMMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPLDAAIQANLRET
TTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSR
SRKLRSFLDT
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggccacgaaagctgcgaacagcgtggaagtttccgaaacgcgggaggaatccgcagac
ggtcctctgatggacggcatgggtttggccgtcaagaagatgatcgcccgcggcaaggag
cgcgggtatgtcacctatgacgagctgaacgcagcgctgccgcaggattcgtcctcttcc
gagcagatcgaagacacgatggcgatgctgtccgaaatgggcatcaacatcgtcgaatcg
gaagagcaggattcggagaacagcggcgaggccggcggcgagggcgaaggccgctcgtcg
ggcaatctcgacgacgacgacatcggccgcaccgacgaccccgtgcgcatgtatctgcgc
gagatggggtcggtggagctgctgtcgcgcgaaggcgaaatcgccatcgccaagcggatc
gaggccggccgcgagatgatgatcggcgcgatctgcgaatcgcccctgaccatccgcgcc
atcctggagtggcatgattccctgatggaagggaagatgctgctgcgcgacatcatcgat
ctggatgccacctatggcggcggtccggacggtgaggagattccggagggtctggccggg
gtggtcgaggccgtcggtcccgccggcaccgccggtgcggctcccgccgccgaagcgccg
gccgacgaggaaggcgacgagccgcgtccgccgcgcgccgaaggcgagggcgacgagggc
gaggaaggcgacgagggcgagaacagcctgtcgctgtccgcgatggaagccgcgctgaag
ccgcaggtcatcgagaccttcgagaacatcaaggcgacctacgacaagctgcacaagctg
catgaggcccgcatgggcgcgatgcagcgcggcgaggatgtcggcaagcagacggacaag
aagtacgacaagctcaagaccgagatggtcgagctgatgaacaccgtccgcctgaacaac
cagcgcatcgaacagctggtcgagcagctctatggcctgaaccgcaagctgaccggcttc
gaaggccgcctgctgcgcatggcgaccgagtgccgggtgaagcgcgaggacttcctgaac
cagtatttcggccacgagctggacccgaactggctggagcgcatccgcggcctgaacccc
aagacctggggcaagttcgcggagaagtacgacagcgacatccgcaagacgcgcgaggcg
atctccaacgtcgccgacgaggcgcgcctgccgatcaacgagttccgccgcatcgtctcc
accgtccagaagggcgagaaggaagcgagccgcgccaagaaggagatggtcgaggccaac
ctgcgtctcgtcatctccatcgccaagaagtacacgaaccgcggcctgcagttcctggac
ctgatccaggagggcaacatcggcctgatgaaggcggtcgacaagttcgagtaccggcgc
ggctacaagttctcgacctacgccacctggtggattcgtcaggccatcacccgttccatc
gcggaccaggcgcggaccatccgcatcccggtccacatgatcgagacgatcaacaagctg
gtccgcaccagtcgccagatgctgcacgagatcggccgcgagccgaccccggaagagctg
gccgagcgtctgatgatgccgctggagaaggtccgcaaggtcctgaagatcgccaaggag
ccgatctccctcgaaacgccgatcggcgacgaggaggattcgcatctcggcgatttcatc
gaggacaagaacgcggtcctgccgctcgacgccgccatccaggcgaacctgcgcgagacg
acgacccgcgtcctggcctcgctgacgccgcgcgaggagcgtgtgctgcgcatgcgcttc
ggcatcggcatgaacaccgaccacacgctggaagaggtcggccagcagttcaacgtgacc
cgcgagcgtatccgccagatcgaggcgaaggcgctgcgcaagctgaagcacccgtcgcgg
tcgcgcaagctgcgcagcttcctggatacctga
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