Azospirillum oryzae: HUE56_20880
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Entry
HUE56_20880 CDS
T06782
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aoz
Azospirillum oryzae
Pathway
aoz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aoz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HUE56_20880 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoz03021
]
HUE56_20880 (rpoC)
03400 DNA repair and recombination proteins [BR:
aoz03400
]
HUE56_20880 (rpoC)
Enzymes [BR:
aoz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HUE56_20880 (rpoC)
Transcription machinery [BR:
aoz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HUE56_20880 (rpoC)
DNA repair and recombination proteins [BR:
aoz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HUE56_20880 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QKS52814
UniProt:
A0A6N1AU75
LinkDB
All DBs
Position
complement(2485987..2490159)
Genome browser
AA seq
1390 aa
AA seq
DB search
MNELMNIFGQVQGPQSFDQIRIQIASPERIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLKDLERILYFENYVVIEPGLTPLKLHSLLNEEEYLNAQDEYGEDAFTAS
IGAEALRIMLSALDLDEEKKRCREDLRDTNSEAKRKKLVKRLKLIDAFLASQSRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELKAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYAKLELYGLASTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGIYYISMDRPSEKGEGMVFANVSEIEQALNA
KVLSIHAKIKARYVGVDDEGNEQITIVETTPGRMLLSELLPRHPKVPFSLINRVLTKKDV
GNVIDAVYRHCGQKETVIFADRLMKLGFGHACRAGISFGKDDMVIPAAKEKLVNESKERV
KEFEQQYLDGLITQGEKYNKVVDVWSECTEKVASEMMKAISTTEAGKPVNSVYMMAHSGA
RGSAAQIRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKT
ANSGYLTRRLVDVAQDAIIVEHDCGTERGITVKAVIDGGEVISPLGDRILGRTVVGAVID
PLNGELIVEDGGLIDEPTVDRIERSGIDSVKIRSVLTCETRDGVCAKCYGRDLARGTLVN
TGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSQIEAAFEATVRINNRNVVMNSS
GIPVVMGRSTEVILLDDQGRERARHRVPYGAKLLADEGVKVERGAKLAEWDPYTLPIITE
RAGTARYIDLVEGISMREVMDEATGISSKVVVDWRQQPRGADLKPRIALVDERGDLITLP
NGLEARYFMSVDAILSVENGAEVRAGDVLARIPRESSKTRDITGGLPRVAELFEARRPKD
FAIISEMSGRVEFGKDYKTKRRIVVRNEETGDEKEYLIPKGKHISVQEGDYVERGDLLMD
GNPVPHDILAVMGVEALADYLINEIQDVYRLQGVKINDKHIEVIVRQMLQKVEITDAGET
TFLVGEQVDRQEFDEENEKTVAEGLQPAHGHPVLQGITKASLQTRSFISAASFQETTRVL
TEAAVGGKVDNLEGLKENVIVGRLIPAGTGSVVNRLKLIAAERDREAALEAGAPEETPAL
PTPGEESSAA
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagttgatgaacattttcggccaggtccaggggccgcagagcttcgatcagatc
cgcatccagatcgcgagccccgagcggatccggtcctggtcctacggcgagatcaagaag
ccggaaaccatcaactatcgcaccttcaagccggagcgcgacggcctgttctgcgcccgc
atcttcggcccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaagtat
cgcggcatcatctgcgagaagtgcggcgtcgaggttacgctgtcgaaggtccggcgcgag
cgcatgggccatatcgaactggcgtccccggttgcgcacatctggttcctgaagtcgctg
ccgagccgcatcggtctgctgctcgacatgacgctcaaggatctggagcgcatcctctat
ttcgaaaactacgtcgtcatcgagccgggcctcaccccgctgaagctgcattcgctgctg
aacgaggaagagtacctcaacgcccaggacgagtacggcgaggacgccttcaccgcgtcg
atcggtgccgaagcgctgcgcatcatgctgtccgcgctcgacctcgacgaggagaagaag
cgctgccgcgaggatctgcgcgacaccaactccgaagccaagcgcaagaagctggtgaag
cgccttaagctgatcgacgcgttcctggcctcgcagtcgcgtccggagtggatgatcctg
gaagtcattccggtgatcccgcccgaactgcgtccgctggtcccgctggacggcggccgt
ttcgccacgtcggatctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctg
aagcggctgatcgagctgaaggcgccggacatcatcgtccgcaacgagaagcgcatgctg
caggaggccgtcgacgctctgttcgacaacggccgccgtggccgcgtcatcaccggcgcc
aacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttccgt
cagaacctgctcggcaagcgcgtcgactattcggggcgttcggtcatcgtcgtcggtccg
gagctgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccc
ttcatctacgccaagcttgagctgtatggcctcgcctccaccatcaaggccgccaagcgg
atggtggagaaggagcgtcccgaggtgtgggacatcctggaagaggtcatccgcgagcat
ccggtgatgctgaaccgggcgccgacgctgcaccgtctcggcatccaggcgttcgagccg
acgctgatcgaaggcaaggcgatccagctgcacccgctggtctgcaccgccttcaacgcc
gacttcgacggcgaccagatggccgtgcacgtgccgctgagcctcgaggcccagctggaa
gcgcgcgtcctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcaagccgatc
attgtgccgtcgcaggacatcgtcctcggcatctactacatctccatggaccgcccgagt
gagaagggcgagggcatggtgttcgccaacgtctcggaaatcgagcaggcgctgaacgcc
aaggtcctgtcgatccatgcgaagatcaaggcgcgctacgtcggcgtcgacgacgagggc
aacgagcagatcaccatcgtcgagacgactcccggccgcatgctcctgtcggagctgctg
ccgcgtcacccgaaggtgcccttctcgctgatcaaccgcgtccttaccaagaaggacgtc
ggcaacgtcatcgacgccgtctaccggcattgcggtcagaaggagacggtgatcttcgcc
gatcgcctgatgaagctgggctttggccacgcctgccgcgccggcatctccttcggcaag
gacgacatggtcatccccgccgccaaggagaagctggtcaacgaatcgaaggagcgggtg
aaggagttcgagcagcagtatctcgacggcctgatcacgcagggcgagaagtacaacaag
gtcgtcgacgtctggtcggaatgcaccgaaaaggtcgcctccgagatgatgaaggcgatc
tcgaccaccgaagccggcaagccggtcaactcggtgtacatgatggcccactccggcgcc
cgcggttccgccgcgcagatccgtcagctggccggcatgcgcggcctgatggccaagccg
tcgggcgagattatcgaaacgccgatcatctcgaacttcaaggaaggcctgaccgtgctg
gagtacttcaactccacccacggcgcccgcaagggtctggccgacaccgccttgaagacg
gcgaactccggttacctgacccgtcgtctggtcgacgtggcgcaggacgccatcatcgtc
gagcatgattgcggcaccgagcgcggcatcaccgtcaaggcggtgatcgacggcggcgaa
gtcatctccccgctgggcgatcgcatcctcggccgcaccgtggtcggcgcggtgatcgac
ccgctgaacggcgaactgatcgtcgaggacggcggcctgatcgacgagccgacggtcgac
cgcatcgaacggtcgggcatcgactcggtcaagatccgctcggtcctgacctgcgagacc
cgcgacggcgtctgcgccaagtgctacggccgtgatctggcccgcggcacgctggtcaac
accggcgaggcggtcggcgtcatcgcggcgcagtcgatcggcgagccgggcacccagctg
acgatgcgtaccttccacatcggtggtgcggcgcagcgcggtgcggagcagagccagatc
gaggcggcgttcgaagcgacggtgcggatcaacaaccgcaacgtcgtcatgaactcgtcc
ggcatcccggtggtcatgggccgcagcaccgaagtcatcctcctcgacgaccagggccgt
gagcgagcgcgtcaccgcgtgccgtacggtgccaagctgctggcggacgagggtgtgaag
gtcgagcgcggcgccaagctggccgagtgggacccctataccctgccgatcatcaccgag
cgtgccggtaccgcccgttacatcgacctcgtggagggcatctccatgcgcgaggtgatg
gacgaggcgacgggcatcagctccaaggtggtggtcgactggcgtcagcagccgcgcggc
gcagacctgaagccgcgcatcgcgctggtggacgagcgaggcgacctgattaccctgccg
aacggcctggaagcccgctacttcatgtcggtggacgccattctgtcggtggagaacggt
gccgaagtccgggccggtgacgtgctggcgcgtatcccgcgcgagtcgtccaagacccgc
gacatcaccggtggtctgccgcgcgtggccgagctgttcgaggcgcgtcgtccgaaggac
ttcgccatcatctcggagatgagcggtcgcgtcgaattcggtaaggactacaagaccaag
cgccgcatcgtcgtccgcaacgaggaaaccggcgacgagaaggagtatctgatcccgaag
ggcaagcacatctccgtgcaggagggtgactatgtcgaacgcggcgatctgctgatggac
ggcaacccggtgccgcacgacatcctggcggtgatgggtgtggaggccttggccgactac
ctgatcaacgaaatccaggacgtctatcgactgcagggcgtgaagatcaacgacaagcac
atcgaggtgatcgttcgccagatgctgcagaaggtcgagatcaccgacgccggcgagacc
accttcctggtgggcgagcaggtcgatcgtcaggagttcgacgaggagaacgagaagacg
gtcgccgaggggctgcagccggcccacggtcacccggttctccagggcatcaccaaggcc
agcctgcagacgcggtccttcatctcggccgcgtcgttccaggaaaccacccgcgtcctc
acggaagcggccgtcggcggcaaggtcgacaacctggaaggcctgaaggagaacgtcatc
gtcggccgcctgatcccggccggcacgggctccgtggtgaaccgcctgaagctgatcgcc
gccgagcgtgaccgcgaagcggccctggaagccggcgctccggaggaaactccggccctg
ccgaccccgggcgaggaaagctccgcggcctga
DBGET
integrated database retrieval system
