Azospirillum oryzae: HUE56_24750
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Entry
HUE56_24750 CDS
T06782
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aoz
Azospirillum oryzae
Pathway
aoz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aoz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HUE56_24750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aoz03400
]
HUE56_24750
Enzymes [BR:
aoz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HUE56_24750
DNA repair and recombination proteins [BR:
aoz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HUE56_24750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
AAA_30
SecA_DEAD
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QKS53736
UniProt:
A0A6N1AQ14
LinkDB
All DBs
Position
unnamed6:complement(133808..137242)
Genome browser
AA seq
1144 aa
AA seq
DB search
MLDGVPVAEPTPVAPPRVAASSPAMVSVQSEGELAVRLAALARRPGGVLLLARSDSRATR
LARLAGDLFPDLNVVLLPIDETAAGDRAAPSRAVLGRRAAGLMRLAEGGRPDAGRLVVAS
ADLALQRLPPSDAWAGGRFRLTRGMAYDETAWRGWFARTGYVLDDRVDEPGEVAIRGAVV
EVFPGDCDRPVRCDIADGIVRELRLYDPVSQRSVRSIDGITLGPVSDLIVGAEMLDRLAA
SLAGLGSALPDDLRRQLEEGRRPYGFDLQLPNVFDNCPLLLDLLPDALVVLDAGARDRIE
ARADDLAADNLTNAGPNRRIRRVDPCPLPVPALERRLIDADMLQEKLAARSVLPVEVKAG
PTMEPIRTERTLLRRAAALAGEGRAVLLAARSGGGAGEADRLAERASSALGRPVPRLDRW
PDPPLAAGDCAVLRLRTADGFVCDGMSVLVAPRHGEERGGEAPARPPLAPSELATGDFVV
HLDYGIGRLIGLETITSGDDEDSTADFLVLDYAHDDRLLVPTADFDRLWRHGSADTGARL
DSLKNAHWLERRAVLEAEIAETAKGILREARRRAREVAPVIDPPADRMRRFGARFGFDPT
EGQRRAVHAVLDAMRRGHPMDHLVCADVGYGKTEVALRAAAAVAFAGHQVAVMAPTSVLA
RQHLDVFRRRFAGFGVTVEPLTGAMTKPEADRVRAGLADGSVDIVIGTHALLSKDVRFDR
LGLMVVDEEQRFGAAQKQALKRRTKGVHSLALSATPIPRTLQGALAGLRGLSIIDTPPAR
RRPVRTAVTPRDPATARAALLRELGRGGQAFCVVPRIADLGELEAWIRGLVPSARIAVAH
GRLGAAALDDAVMGFVDGESDILLATPIIESGIDIPRANTLLLFRPDLFGLGQLHQLRGR
VGRGAVQGYAYLLTDPDHPLEERAARRLGSLEVIESLGGGFVLSMLDLDQRGAGDLLGED
QSGHLRAVGTELYQRILADALRALRRQPDDRWDPEVTVAVPHCIPSAYIPEEELRIGLHR
RIARTREAGELDALREEMEDRFGPLPDPVERLLAIADLRCRCRALGVASLGCGPAGVAVT
LRGERAAAKAVTVAKRSKGFLRAQDDRLSAALEAPDADGRLANAARVLDCIEAIVRKAQR
RKRG
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgcttgacggagttcccgtcgccgaaccgacgcccgtcgcgccgccccgggttgcggcc
tcgtctcccgccatggtttccgtgcagagcgaaggcgaactggccgttcggctggcggca
ctcgcccgccggcccggcggcgtcctgctgctggcccgcagcgattcgcgagccacccgg
ctggcgcgactggcgggcgacctgttccccgacctcaatgtcgtcctgctgcccatcgac
gagacggcggccggtgaccgtgccgcgccgtcgcgggccgtgctggggcgtcgcgccgcc
ggcctgatgcggcttgccgaaggggggaggcccgacgccggccggctggtcgtggcctcg
gccgatctggccttgcagcggctgccgccgtcggacgcctgggcggggggacgcttccgc
ctgacgcggggcatggcgtatgacgagacggcgtggcgcggctggttcgcacgtaccggc
tatgtgctggacgaccgggtggacgagcccggcgaggtcgcgatccgcggcgcggtggtg
gaggtcttccccggcgactgcgaccgccccgtccgttgcgacatcgccgacggcatcgtg
cgcgaactgcgcctgtatgatccggtttcccaaaggtcggtgaggtcgatcgacgggatc
acgctgggcccggtcagcgacctgatcgtcggggcggagatgctcgaccggctggcggca
agccttgccggacttgggtccgccctgccggacgatctgcggcggcagttggaggaggga
cggcgaccctacggcttcgaccttcagcttcccaatgtcttcgacaattgcccgctgctg
ctcgacctgctgccggatgcgctggtcgtgctggatgccggcgcgcgtgatcgcatcgag
gcacgggccgacgatctggccgccgacaatctgaccaatgccgggccgaaccggcgcatc
cgccgcgttgatccctgcccgctgccggtcccggcactggagcgccggctgatcgacgcc
gacatgctgcaggagaagctggccgcccgttccgtgctgccggtggaggtgaaggccggt
cccaccatggagccgatacggaccgaacgaacgctgctgcggcgcgcggcggcgctggcc
ggggagggcagggccgtgctgctcgccgcccgttccggcggtggtgcgggcgaggccgac
cggctggccgaacgggcgtcttcggcattgggtcgccctgtgccgcgtctggaccggtgg
cccgacccgcccctggcggcgggcgactgcgccgtgctgcggttgcggaccgccgacggc
ttcgtctgcgacggcatgtccgttctggtggcgccgcgccacggtgaggagcgcggcggc
gaggccccggcccggccgccgctggccccgtcggaactggcgaccggcgacttcgtcgtg
catctcgactatggcatcggccggctgatcgggctggagaccatcacgtccggcgatgat
gaggattcgacggcggatttcctggtgttggactacgcccatgacgaccggctgctggtg
ccgaccgccgatttcgaccggctatggcgtcacggctccgccgataccggcgccaggctc
gacagcctgaagaacgcccattggctggaacgccgggccgtgctggaggcggagatcgcc
gagaccgccaagggcatcctgcgcgaggcccgccgccgcgcccgcgaagtggccccggtc
atcgacccgccggccgaccgcatgcgccgcttcggtgcccgtttcggcttcgatcccacc
gaaggacagcggcgcgccgttcatgccgtgctggacgccatgcgccgggggcatccaatg
gaccatctggtctgcgccgatgtcgggtacggcaagacggaggtggccttgcgcgcggcg
gcggcggtggcgtttgccggccatcaggtggcggtgatggccccgacctccgtcctcgcc
cgccagcatctggacgtgttccgccgccgcttcgccggcttcggcgtgacggtggagcca
ctgaccggcgccatgaccaagcccgaggccgaccgcgtgcgagccgggctggccgacgga
tcggttgacatcgtcatcgggacgcatgcgctgctgtcaaaggacgtccggttcgaccgc
ctcggcctgatggtggttgatgaggaacagcgcttcggtgccgcccagaagcaggcgctc
aagcggcgcaccaagggcgtccacagtctggcgctcagcgccacgccgatcccgcgcacg
ctgcaaggcgccctggcgggcctgcgcgggctcagcatcatcgacacgccgcctgcccgc
cgccgaccggtgcgcaccgccgtcactccgcgcgacccggccaccgcccgcgccgccctg
ctgcgcgaattggggcgcggcgggcaggccttttgcgtcgttccgcgcatcgccgacctc
ggtgaattggaggcatggatccgcgggctggtgccgtcggcccggatcgcggtcgcgcat
ggccggctgggcgcggcggcgctggacgatgcggtgatgggcttcgtcgacggcgaaagc
gacatcctgctggcgacgccgatcatcgaatccggcatcgacatcccgcgcgccaacacg
ctgctgctgttccgccccgacctgttcgggctgggccagctgcaccagctgcgcggccgg
gtcgggcggggtgcggtgcagggctacgcctatctgctgacagaccccgaccatccgctg
gaggagcgggcggcgcgccggctcggctcgctggaggtgatcgagagcctgggcggcggt
ttcgtgctgagcatgctcgacctcgaccagcgtggggcgggcgacctgctgggcgaggac
cagagcggccatctgcgtgccgtggggaccgaactctaccagcgcatcctggccgacgcc
ctgcgggcgctgcgccgccagcccgacgaccgctgggacccggaggtgacggtcgcggtt
ccgcactgcatcccatccgcctacattccggaggaggaactgcgcatcggcctgcaccgc
cgcatcgcccgcacccgcgaggcgggcgagttggacgccctgcgcgaggagatggaggac
cgcttcggcccactgccggatccggtggagcggctgctggccatcgccgatctgcggtgc
cgttgccgggcgctgggcgtcgcgtcgctcggttgcggcccggcgggcgtggcggtgacc
ttgcggggcgagcgcgccgcggcaaaggccgtgacggtggcaaagcgctccaagggcttt
ctgcgtgcccaggacgaccggctgtccgccgcgctggaggcgccggacgccgatggccgg
cttgccaacgcggcccgcgtgctcgactgcatcgaggcgatcgtccgcaaggcgcaacgg
cgaaagcggggatag
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