Actinobacillus pleuropneumoniae AP76 (serotype 7): APP7_0387
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Entry
APP7_0387 CDS
T00717
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
apa
Actinobacillus pleuropneumoniae AP76 (serotype 7)
Brite
KEGG Orthology (KO) [BR:
apa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apa03019
]
APP7_0387 (hrpA)
Enzymes [BR:
apa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
APP7_0387 (hrpA)
Messenger RNA biogenesis [BR:
apa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
APP7_0387 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
AAA_22
AAA_23
nSTAND3
HA2_N
ResIII
NACHT
SLFN-g3_helicase
T2SSE
ABC_tran
NTPase_1
SRP54
AAA_30
PhoH
AAA_24
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ACE61039
UniProt:
B3H0M7
LinkDB
All DBs
Position
complement(435556..439557)
Genome browser
AA seq
1333 aa
AA seq
DB search
MKPSQKNFKNRPLDENQKALIANLKELTNTDYRRLRARIHGISSIKKQETKNNVIAEIER
EILSAQAAFQARKAQHSSLEITYPDLPVSARREEILKLIAENQVVVIAGETGSGKTTQLP
KMCLELGRGVKGLIGHTQPRRLAARSVANRIAEELKSEMGATVGYKVRFNDQVGENTLVK
LMTDGILLAEIQNDRYLNQYDTLIIDEAHERSLNNDFILGYLKQILHKRPDLKVIITSAT
IDVERFSRHFNNAPIIEVSGRTFPVEVRYRPVVEEEDQDQLQGIINAVDELQAEGRGDIL
IFMSGEREIRDTAEALQKQELRFTEILPLYARLSAAEQQRIFQPSGLNRVILATNVAETS
LTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTSEGICIRLYSE
EDFNARPAFTDPEILRTNLASVILQMTSLGLSDIEAFPFVDRPDTRQVQDGMRLLEELGA
IGRGTLRVSSDVHSASRKHSPNLFPCVVSSDARSASLHKLTPIGRQLAQLPIDPRLGRMV
IAAAQNGSLHEVMMIVSALSIQDPRERPQERQQAADEKHRRFADKDSDFLAFVNLWHYIQ
TQQKELTKNQFRKQCQKDFLNYLRVREWQDIYHQLRLAVREMGLPINSEEANYQQIHTAL
LTGLLSHIGMKDSEKMHYLGARNAHFYVFPTSALFKKQPKWLTASELVETTKLWARTVAK
IEPEWIEPLAGHLIKRSYSEPHWSKSKGAVMAYEKVSLYGIPVVANRLVNYGSIDPTVSR
EIFIRSAMVEGDWHNNYKFFKENNRLIKEVEDLEHKSRRRDILVDEQTLFDFYDQRIGTE
VVSSRHFDTWWKKASQKDPELLNFEKSFLMNENANTVSDLDFPNFWYQGQLKLKLSYQFE
IGKDHDGVTVHIPLPLLNQVEPEGFDWQIPGLRHELVVALIKSLPKATRRNFVPAPNYAD
AFLARAEPYQKPLLESLAYELRRMTGVTIDPELWDLSQLAPHLRMTFRVVDEKGKKLQES
ENLDELKFALKDQVQESLSTIADDGIEQSGVHLWNFANLPQFYEHKKANFSVKAYPAIVD
EQTAVGVKLFETEFEQTRAMQAGLRRLLLLNVPSPIKYLHEKLPNKAKLGLYFAPFGKVL
ELIDDCIACAVDKLVEEFGGFVWNEEKFQALHEFVRANLNDTTAEIALQVEKCLTLAFEI
NKRMKGKMDFTMAFALSDIKAQIQGLIYPDFVTKTGHQRLGDLYRYLSAIDKRLDKLGTD
TNTDRAKMLRIEQIQNAYKQLLAKLPKSKAIPDEILEIRYMIEELRVSLFAQQIGTKYPI
SDKRILNVISAIN
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccttcgcaaaaaaatttcaaaaatagaccgcttgatgagaaccagaaagcatta
atcgcaaatttaaaagaactcaccaataccgattaccgccgtttacgtgctcgtattcac
ggcatttcctccatcaaaaaacaagaaaccaaaaacaacgtaattgcggaaattgagcgt
gaaattctctcagcacaagcagccttccaagctagaaaagcacaacattccagccttgaa
atcacttaccccgatttaccggtttccgctcgccgtgaagaaatcttaaaactgattgcg
gaaaatcaggtggtggtgattgccggtgaaaccggttcgggtaaaaccactcagctaccg
aaaatgtgtttggaactcggacgtggcgtaaaaggcttgattggacatactcagcctcgc
cgtttggcggctcgttcggtggcaaaccgtattgccgaagaattaaaaagcgaaatgggc
gcaacagtcggttataaagtacgtttcaatgatcaagtgggcgaaaacacccttgtgaaa
ttgatgacggacggtattttacttgccgaaatccaaaacgaccgctatctcaatcaatac
gatacgctaattattgatgaagcgcacgaacgctcgctcaataacgattttattcttggc
tatctgaaacaaattctacataaacgccctgatctaaaagtgatcattacctcggcaacg
attgatgtggagcgtttttctcgtcatttcaacaatgcaccgattattgaggtttccgga
cgcacctttccggtggaagtgcgttatcgccctgttgttgaggaagaagatcaagaccaa
ttacagggcattattaatgcggtcgatgagttacaagccgaaggtcgcggcgatattttg
atttttatgagcggtgaacgtgaaattcgtgacactgccgaagccctacaaaaacaagag
ctaagattcactgaaattctaccgctttacgctcgcctctcggctgccgaacagcaacgc
attttccagccaagcggtctaaatcgagtaattttagccaccaacgtggcggaaacatca
ctcaccattccgaatatcaaatatgtgattgataccggtacggcacgtatttctcgctac
agctaccgtaccaaagtgcaacgtttgccgattgagccgatttctcaagcctctgccaac
cagcggaaaggtcgttgcggacgaaccagcgaagggatttgtatccgcctctattcagag
gaagattttaacgcacgtccggcatttaccgatccggaaattctgcgtacgaatctcgct
tcggtgattttacaaatgacctcgcttgggctgtcggatattgaggcgtttccatttgtt
gatcgtccggataccagacaggtgcaggacggtatgcgattgttggaagaactcggggcg
attggtaggggcacactgcgtgtgtcctcggacgtacacagtgcgtcccggaaacattcg
ccaaatttatttccttgcgttgtgtcctcggacgcacgcagtgcgtccctacataaatta
acaccaatcggtcgccaacttgctcaactccccatcgatcctcgcttaggccgtatggtc
attgccgcggcacaaaacggttcgttacacgaagtgatgatgattgtctccgcactttcg
attcaagatccgcgtgagcgcccgcaagaacgccaacaggctgcggatgaaaaacatcgc
cgttttgccgataaagattccgatttcttggcgtttgtgaatttgtggcattacattcaa
acccaacaaaaagaactgaccaaaaaccagttccgcaagcaatgtcagaaagattttctc
aactatttacgtgtgcgtgaatggcaggatatttatcatcaattgcggcttgccgtgcgt
gaaatgggcttgccgattaatagtgaagaagcaaactatcagcaaattcacactgcctta
ctaaccggtttgctgtcacatatcgggatgaaagacagcgaaaaaatgcactacctcggg
gcgagaaatgcgcatttttatgtgttcccgacctcggcgcttttcaaaaagcagccgaag
tggcttactgcgtccgaactggtagaaaccaccaagttatgggcaagaactgtggcaaaa
atcgaaccggaatggattgagccactcgccggacatttaataaaacgcagttacagcgaa
ccgcattggtcgaaatccaaaggggcggtaatggcgtatgaaaaagtctcgctctacggt
attccggtggtagcgaatcgtcttgtcaattacggttcaattgatccgactgtcagccgt
gaaatctttattcgctcggcaatggttgagggtgattggcacaataattacaaatttttc
aaagaaaataaccgcttgatcaaagaagtggaagacctcgaacacaaatctcgccgccga
gatattttagtggacgaacaaactctattcgacttctacgatcaacgtatcggaacggaa
gtggtatccagtcgccattttgatacatggtggaaaaaagcgagtcaaaaagatcctgaa
ttgctcaactttgaaaaatcattcttaatgaatgaaaacgccaatacggtcagcgatttg
gatttcccgaatttctggtatcaaggtcagcttaaactaaaattgagttaccaatttgaa
atcggtaaagatcacgacggcgtaaccgtgcatattccgttgccgttgctcaaccaagtg
gaaccggaaggctttgattggcaaattccggggcttcgccacgagctagtggtagcgtta
attaaatcattgccgaaagcgactcgccgtaattttgtaccggcaccgaactatgcggat
gcgtttttagctagagccgaaccgtatcaaaaaccattgctagaaagtttggcttatgag
cttcgccgtatgactggggtaacgattgatccggaactgtgggatttgtcgcaacttgca
ccacatttacgtatgacattccgtgtggtggatgaaaaaggtaaaaaactacaagaaagc
gaaaacttggacgaactgaaatttgccctgaaagatcaggtgcaagaaagcctttcgacg
attgctgatgacggtatcgagcaaagcggtgtacatttgtggaatttcgctaacttaccg
caattctacgagcataaaaaagccaatttcagcgtaaaagcctacccggcaattgtcgat
gagcaaaccgcagtgggcgtaaaattatttgaaaccgaatttgagcaaactcgtgcaatg
caagctggtttacgccgtttgctattgctcaacgtgccttcgccaatcaaatacttacac
gaaaaattgccgaacaaagcaaaacttggactttactttgccccattcggtaaagtgttg
gaattgatcgatgactgtatcgcttgtgcggtagataaattagtggaagaatttggtggc
tttgtatggaatgaggaaaaattccaagcgttacacgaatttgtgcgggcaaacctaaat
gatacaacggctgaaatagcgttacaggttgaaaaatgtctgactctcgcctttgaaatt
aacaagcgaatgaaaggcaaaatggattttacgatggcgtttgctctctcagatattaaa
gctcaaattcaagggttaatttaccccgattttgtcactaaaaccggtcatcaacgcttg
ggtgatttatatcgttaccttagtgccattgataaacgtttggataaactcggtaccgac
actaacaccgatagagctaaaatgctcagaatagagcaaatacaaaatgcttataagcaa
ctattagcaaaactgccaaaatctaaagcaattccagatgaaatattagaaattcgttac
atgattgaagaactgagagtgagcctatttgcccagcaaatcggcaccaaatatcctatt
tctgataagcggattttgaatgtcatttctgcaataaattaa
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integrated database retrieval system
