Isoalcanivorax pacificus: S7S_02020
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Entry
S7S_02020 CDS
T03580
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
apac
Isoalcanivorax pacificus
Pathway
apac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
S7S_02020 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apac03021
]
S7S_02020 (rho)
03019 Messenger RNA biogenesis [BR:
apac03019
]
S7S_02020 (rho)
Transcription machinery [BR:
apac03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
S7S_02020 (rho)
Messenger RNA biogenesis [BR:
apac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
S7S_02020 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA_22
S1CSD-TOTE-2
AAA
Mor
Spore_III_AA
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
AJD46826
UniProt:
A0A0B4XIB9
LinkDB
All DBs
Position
complement(420953..422212)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLSELKQKPIGELLEIAREMGLENLARTRKQDVIFSILKKAAKNGSDIYGDGVLEILQD
GFGFLRSSEGSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVSEIN
FDKPENAKNKILFENLTPLFPTERLVMELGNGSTEDITSRVIDLVAPIGKGQRGLIVAPP
KAGKTMLLQQIAHSIARNNPESHMIVLLIDERPEEVTEMSRTVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLVEHKQDVIILLDSITRLARAYNTVQPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNMELHLDRKVSEKRVFPAINI
KKSGTRREERLVGEDELKNMWVLRKVLHPMDEIASIEFLIDRLKQTKTNNEFFDAMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgtctgaactgaagcagaagcccattggagagctgctggaaatcgcccgcgaa
atgggcctggaaaacctcgcccgcacccgcaagcaggatgtcattttctccattctgaaa
aaggccgccaaaaatggctccgacatctacggcgatggtgtcctcgagatcctgcaggac
ggctttggcttcctgcgcagctccgaaggctcctatctggcgggcccggatgatatctac
gtttccccgagccagatccgccgctttaatctgcgcaccggcgataccatttccggcaag
atccggccaccgaaagaaggcgagcgttatttcgcattattgaaagtcagcgaaatcaac
tttgataaaccggaaaacgccaagaacaagatcctgttcgagaacctgacccccctgttc
cccaccgaacggctggtgatggaactcggcaacggttccaccgaggacatcacctcccgc
gtgattgatctcgtggcaccgatcggcaagggccagcgcggcctgatcgtcgcgccgccc
aaagccggcaagaccatgctcctgcaacagatcgcccactccatcgcccgcaacaatccc
gaatcccacatgatcgtgctgctgatcgacgagcggccggaagaggtgacggaaatgtcg
cgtaccgtgcgtggcgaagtggtggcgtccacctttgacgagccgccggcacgtcacgtt
caggtggccgaaatggtgatcgagaaagccaagcggctggtcgagcacaagcaggacgtg
atcatcctgctcgactccattacccgtctggcccgtgcctacaacaccgtgcagcccagc
tccggcaaggtgcttaccggtggtgtggatgcccacgccctggaaaaaccgaagcgcttc
ttcggtgccgcccggaacatcgaggaaggcggcagcctgacgatcctcgccaccgcgctg
gtggaaaccggctcgaagatggacgaagtgatctacgaggaattcaagggcaccggcaac
atggaactgcatctggaccgcaaggtatccgaaaaacgcgtgttcccggctatcaatatc
aagaagtccggcacccgtcgcgaagagcgcctggtgggcgaggacgaactgaaaaacatg
tgggtgctgcgcaaagtgctgcacccgatggatgaaatcgcctcgattgaattcctgatc
gaccgtctgaaacagaccaagaccaataacgaattcttcgatgcaatgaaacgcaaataa
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