Isoalcanivorax pacificus: S7S_07830
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Entry
S7S_07830 CDS
T03580
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
apac
Isoalcanivorax pacificus
Brite
KEGG Orthology (KO) [BR:
apac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apac03019
]
S7S_07830
Enzymes [BR:
apac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
S7S_07830
Messenger RNA biogenesis [BR:
apac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
S7S_07830
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND_NTPase5
WHD_HA2
ResIII
nSTAND3
NACHT
SLFN-g3_helicase
T2SSE
AAA_30
AAA_23
AAA_25
ABC_tran
SRP54
TsaE
Motif
Other DBs
NCBI-ProteinID:
AJD47982
UniProt:
A0A0B4XNY2
LinkDB
All DBs
Position
1742947..1746816
Genome browser
AA seq
1289 aa
AA seq
DB search
MTTPISEQSPAAQLQALSRQLEHAMQADQPRLRRRLQGLRKRFDARALAQVQQALSASVA
RRAAREALTPRIDWPDLPVVQCLDELGEAIRHHQVVVVAGETGSGKTTQLPKLCLALGRG
RAGMIGHTQPRRLAARAVANRLAEEIDTRVGEMVGFKVRFQDQVSDSTLVKLMTDGMLLA
EIQQDRYLDQYDTLIIDEAHERSLNIDFLLGYLQRLLPRRPDLKIIITSATIDHERFAAH
FGGAPVMEVSGRTYPVEVRYRDNAEEGERDLRREVEEVLREIEREERGQVPPARDVLVFL
SGERDIRELHHHLRRCDFRDTEFLPLYARLTQQEQHRVFALHRGRRVVLSTNVAETSLTV
PGIRYVIDAGTARISRYSVHSKVQRLPVEPVSQASAEQRKGRSGRVMPGICYRLYSEADF
LSRPAFTDPEIRRTNLAAVILQMADLGLGELEDFPFIDAPDGRLVRDGYRLLEELGAIDG
RTLSAVGRQLARLPLDPRLGRMVLRAADTGALREVLIIVAALSVQDPRERPHDQQQQADQ
AHQPFTDKQSDFVFFLTLWQWAETQREALTRNQYEKLLKKTFLSPTRMREWRDTHHQLLL
LCREMKLPFAQTDASSEAVHRALLAGLLGQVIKRTEEGEWLSTRNRKPVIWPGSALSKSK
ASWLMAAELIDTSRLFARCVAQIQPEWIEQEGAHLVKRQYVEPYWSKKHGAVWAREQVSL
FGLLLVAGRRVSYGAQHPELARELMIREGLVAGELPREPDFVRANRALRAELEEFEHKLR
RRDLLADEEQCFAFYDARLPAGLYSLRHLESWCRRASDAERQALRMTRADLLVRDPGLGQ
NAFPDHLDVGELRLPLSYSFDPSGSRDGVTLNVPVTVLNQLSLERLDWLVPGLLRDKLEA
LLRGLPKAQRRHFVPVPDYVAALLEVLTPGDTPLLPALTRELARMTGVRIELEAWQAVTL
PPHLQFNLRVTDGEQVLAEGRDLAAMQTRFAGHAVAAMTPAQGDEVLTGTDWVFGTLPPV
SELSRGGVVLRTWPALEDRTREVASILCASEEEAAWQHRWGVARLLMLRQGEQVRMLRKF
AGQQPGFQKMAAEKSALARGVLDDALLSATALHFPALASVRDESGFRALLAAGRGDFVKA
VEARLAGWGGLLAAYRDIAARLDKQFPLAWAHAHRDIKQQLAGLFFPGFLCQVPPAWLAE
YPRYLKALAHRLERLGGQIGRDRAQVAELEALWAPYQARAGDTPVWRQPEPLLTYRFLLE
EYRVSLFAQQLGTRMPVSAKRLRQQWEAC
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaccgatttccgaacaatcacccgccgcgcagttgcaggcactgagccggcag
cttgagcacgccatgcaggcggaccagccacggttgcgccggcgcctgcagggcctgcgc
aaacggtttgatgcacgcgcgctggcgcaggtgcagcaggcgctgtcagcgtcggtggcc
cggcgcgcggcacgcgaggcgctgacaccgcgcatcgactggccggacctgccggtggtg
cagtgcctggacgaacttggcgaggcgatccgtcatcaccaggtggtggtggtggccggt
gaaaccggctccggcaaaaccacccagttgccgaaactgtgcctggcgctgggccgtggg
cgcgccggcatgatcggccatacccagccgcgccggctggcggcgcgcgcggtggcgaac
cggctggcggaagaaatcgacacccgtgtcggtgagatggtcggtttcaaggtgcgcttt
caggatcaggtcagcgacagcacgctggtgaaactgatgaccgacggcatgctgctggcg
gaaatccagcaggaccgttatctggatcagtacgacacgctgatcatcgacgaagcgcat
gaacgcagcctcaacatcgatttcctgctgggctacctgcaacggctgctgccgcgccgg
ccggacctgaaaatcatcatcacctccgcgaccatcgaccacgaacgctttgcggcacat
tttggcggtgcgccggtgatggaagtgtccggccgcacctatcctgtggaagtgcgctac
cgcgacaacgccgaagagggcgagcgcgacctgcgccgcgaggtggaagaggtgctgcgc
gagatcgagcgcgaagagcgcgggcaggtgccgccggcccgtgacgtgctggtgtttctc
agtggcgagcgcgatatccgcgaactgcaccatcacctgcgccgctgcgatttccgtgat
accgaattcctgccgttgtacgcccggctgacacaacaggaacaacaccgcgtgtttgcg
ttgcatcgcgggcgccgcgtggtgctgtccaccaatgtggcggaaacctcgctgacggtg
ccggggatccgctatgtgatcgatgccggcaccgcgcgcatcagccgctacagcgtgcac
agcaaagtgcagcggctaccggtggagccggtgtcgcaggccagtgccgagcagcgcaag
ggccgcagcggccgggtcatgcccggcatctgttatcgcctctacagcgaagcggacttt
ctgtcccggcccgcctttaccgacccggaaattcgccgcaccaacctcgctgccgtgatc
ctgcagatggccgacctgggcctgggcgaactggaggattttccgtttatcgacgcgccg
gatggccggctggtacgcgacggctaccggttgctggaagaacttggcgccatcgacggc
cgcactctgagcgcggtcggccggcaactggcacggctgccgctggacccgcggctgggc
cgcatggtgctgcgtgctgccgacaccggcgcgttgcgggaagtgctgatcatcgtcgct
gcgctgtccgtgcaggacccgcgcgagcggccgcacgaccagcagcaacaggcagatcag
gcccaccagccctttaccgacaagcagtcggacttcgtgttctttctcacgctctggcag
tgggccgagacacagcgtgaggcactgacgcgcaaccagtatgaaaaactgctgaagaaa
acttttctgtcacccacgcgcatgcgcgaatggcgtgacacacatcaccagctgctgttg
ctgtgccgggaaatgaaactgccctttgcgcagaccgacgccagcagcgaggccgtgcac
cgcgcgctgctggccggtctgctcgggcaggtgatcaagcgcaccgaggaaggcgaatgg
ttgtccacgcgcaaccgcaaaccggtgatctggcccggctctgcattgtcgaaaagcaag
gcgtcctggctgatggccgccgagttgatcgacaccagccggctgttcgcccgctgcgtg
gcgcagatccagccggaatggatcgagcaggagggcgcgcatctggtcaagcgccagtat
gtggagccgtactggtcgaaaaagcacggcgccgtctgggcgcgcgagcaggtcagcctg
tttggtttgttgctggtggccggccggcgtgtgagctacggcgcgcaacaccctgaactg
gcgcgcgagctaatgattcgcgaagggctggtggccggcgaactgccgcgtgaaccggac
ttcgtgcgtgccaaccgcgcgctgcgtgccgagctggaagaattcgagcacaagctgcgc
cgccgcgacctgctggccgacgaagaacaatgctttgccttttacgacgcgcgcctgccg
gccgggctgtacagcctcaggcatctggaaagctggtgtcgccgcgccagcgatgccgaa
cgccaggcgttacggatgacgcgtgccgacctgctggtgcgtgatcccggcctgggacag
aacgcttttccggatcacctggacgtgggcgaactgcgcttgccactgagctacagtttc
gaccccagcggcagccgcgacggcgtgacattgaatgtgccggtgacggtgctgaaccag
ttatcgctggaacggctcgactggctggtgccaggcctgctgcgcgacaaactggaagcc
ctgttgcgcggcctgccgaaagcacagcgccggcatttcgtgccggtgccggattacgtg
gcggcgttgctggaggtgctgacacccggcgatacaccgttgctgcctgcgctgacccgt
gagctggcccgcatgaccggcgtgcgcatcgaactggaagcctggcaggccgtgacgctg
ccgccacacctgcaattcaatctgcgcgtgacggatggcgagcaggtgctggcggaaggc
cgtgacctggccgccatgcagacgcgcttcgccggccacgcggtggctgccatgacgccc
gcgcagggcgacgaggtgctcaccggcaccgactgggtcttcggcaccttgccgccggtg
agcgaactgtcacgcggcggggtggtgctgcgcacctggccggcgctggaagaccgtacc
cgcgaggtggcgtcaatcctgtgcgccagtgaggaagaggcggcctggcaacatcgctgg
ggtgtggcgcgtttgctgatgctgcgacagggcgagcaggtgcgcatgctgcgcaagttt
gccgggcagcaacccggcttccagaaaatggcggcggagaaatcggcattggcgcgcggc
gtgctggacgacgccttgctcagtgctacagcgctgcatttccctgcgctggcatccgtg
cgcgatgaatccggtttccgcgcattgctggcggcggggcggggcgatttcgtcaaggct
gttgaggcgcggctggccggctggggtgggctgctggcggcctatcgggatatcgcggcg
agactcgacaaacagttcccgctggcctgggcgcatgcccatcgggatatcaagcagcaa
ctggccgggctgttctttcccggtttcctgtgccaggtgccgccggcgtggctggccgag
tacccgcgttacctgaaggcgctggcacaccggctggagcgtctgggcggacagatcggc
cgtgaccgggcccaggtggcggagctggaggcgttgtgggcaccgtaccaggcccgcgcc
ggcgatacgccggtctggcgccagccggagccgctgctgacctatcgtttcctgctggag
gaatatcgtgtcagcctgtttgcccagcaactgggtacccgtatgcccgtgtcggccaag
cggctgcggcagcagtgggaagcctgctga
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