Isoalcanivorax pacificus: S7S_10115
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Entry
S7S_10115 CDS
T03580
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
apac
Isoalcanivorax pacificus
Pathway
apac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
S7S_10115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apac03400
]
S7S_10115
Enzymes [BR:
apac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
S7S_10115
DNA repair and recombination proteins [BR:
apac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
S7S_10115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AJD48435
UniProt:
A0A0B4XNT6
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All DBs
Position
2245153..2248614
Genome browser
AA seq
1153 aa
AA seq
DB search
MTLLPANSLFPTGAEHFRDWSGLDAGSLAVVLAEVAARTPHLLLVVTPNSSQAQQLADSL
TFYLASQDDTPVLLFPDWETLPYDLFSPHQDIISERIEVLHRLPHTRRGILIAPVNTLMQ
RLAPLSHINGNSFQLRVGERFDMETTRRQLVASGYRQRDNVYEHGEFAVRGAIMDIFPMG
AEQPFRIELFDEDIDSLRLFDPDTQRSTGQVQEIALLPAAEFSLSSDGISSFRNRFRERF
DVDHRQCSLYTDVSDGMASPGLEYYLPLFFDQLASLFDYLPDDVHLVQLAGTEDAASHFW
HDVGERFEDRRHDIRRPILSPAELFLPVEELNRHLRQHPRARVQPGMRESNEKSDKGVPF
DFRALPPAAPQRSGNPFAPLQTLVMEHAPLRVLVCAETAGRREALLELMQKQGIQPTLVD
GWQAFLAGQGDWQLTVGELEQGFWAPQHGLLVVAESQLYGERIMQRRRRKTGQETSADQA
FRSLGELVPGSPVVHIDHGVGRYQGLTHMTVDGQQHEFLLLEYAGGDKIYLPVSSLHLIS
RYGGGDPEHAPLTRLGSDQWQRARQKAAEKIHDVAAELLNTYARREARQGRAFQLPEDDY
ARFASAFPFEETADQQAAIAAVLRDLQANRPMDRLVCGDVGFGKTEVAMRATFVAVQNNT
QVAVLVPTTLLAQQHFESFSDRFADWPVTIEVLSRFRSQKEKTDVLARLKAGKVDIVVGT
HQLLQESVQFRDLGLVVVDEEHRFGVRHKERLKEMRAEADILTLTATPIPRTLNMAMSGM
RDISIIATPPEKRLSVKTFVQQKNDTAIKEAILRELLRGGQLYYLHNDIDSMARTAETLR
ELVPDARIGIAHGQMRERDLEQVMSDFYHRRFNVLLCTTIIETGIDVPSANTIIIERADK
FGLAQLHQLRGRVGRSHHQAYAFLLTPPPKAMTKDAVKRLEAIEQASDLGAGFMLASHDL
EIRGAGELLGEEQHGHIESIGFSLYMEMLEQAVEALKRGEQPDTRKPLSGGPEINLRVPA
LIPDDYLPDVFSRLTLYKRIASCDTGEQLDELKVEMIDRFGLLPPQVKNLFRVTALRQRA
QALGVSRIDAGAEQGRLEFSERTAIDPLRLVKLVQSGPNRYKLQGASALRFSVDAETGEE
RFAEVEALLDKLA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgacgttactgcccgcgaactcgctgtttcccaccggcgcggaacatttccgcgactgg
agcgggctggacgccggcagcctcgccgtggtgctggccgaagtggcggctcgcacgccg
cacctgttgctggtggtcacgccgaattccagccaggcacagcaactggccgacagcctg
acgttctacctggccagccaggacgacaccccggtgctgctgttcccggactgggagacc
ctgccctacgacctgttctccccgcatcaggacatcatcagcgagcgcatcgaagtcctg
caccggctgccgcacacccggcgcggcattctcattgcgccggtgaacaccctgatgcag
cggctggcgccgctgtcgcacatcaacggcaacagtttccagcttcgcgtcggcgaacgc
ttcgacatggaaaccacccggcggcagctggtggccagcggctaccgccagcgcgacaac
gtgtatgaacacggcgaattcgccgtgcggggcgccatcatggatatcttcccgatgggc
gccgaacagcccttccgcattgagctgttcgatgaagacatcgactccctgcggctgttc
gacccggacacacagcgctccaccggccaggtccaggaaatcgccctgctgccggcggca
gaattttccctcagcagcgacggcatcagcagcttccgcaaccgtttccgcgaacgcttc
gatgtcgatcatcgccagtgcagcctgtacaccgatgtctccgatggcatggccagcccc
gggctggaatattatctgccgctgttcttcgaccagctcgccagcctgttcgactatctg
cccgacgacgtgcatctggtgcaactggccggcaccgaggacgcggccagccatttctgg
catgacgtcggcgaacgtttcgaggaccgccgccacgacatccgccgcccgatcctgtcc
ccggcagaattattcctgccggtggaagaactgaaccgtcatctgcgccagcacccgcgc
gcgcgcgtgcagcccggcatgcgggagagtaatgaaaagagtgacaagggtgtgccgttc
gatttccgcgccctgccccctgccgcgccacaacgcagcggcaatccgttcgcgcccctg
cagacgctggtgatggagcatgcgccgttgcgtgtgctggtgtgcgcggagaccgccggc
cgccgcgaagccttgctggaactgatgcagaaacagggcatccagccgacgctggtcgat
ggctggcaggcgttcctggccggccagggcgactggcaacttaccgtgggtgaactggaa
caggggttctgggcgccgcagcacggtttgctggtggtagccgaaagccagctctacggc
gagcgcatcatgcagcgccggcgccgcaagaccggccaggaaacctccgccgaccaggcg
ttccgctcgctgggcgaactggtgcccggctcgccggtggtgcatatcgatcacggcgtc
ggccgctaccagggcctgacgcacatgaccgtcgatggccagcagcatgaattcctgctg
ctggaatatgccggcggcgacaagatctatctgccggtgtcgtcattgcacctgatcagc
cgttacggcggcggtgatccggaacatgcgccattgacccgcctgggctcggaccagtgg
caacgtgcgcggcaaaaagccgcagaaaagatccacgacgtcgccgccgaactgctcaac
acctatgcccgccgcgaagcccggcagggccgcgccttccagttgccggaagacgactat
gcgcgcttcgccagcgcatttccgttcgaggaaacggccgaccagcaggccgccatcgct
gcggtgttgcgggacttgcaggccaaccggcccatggaccggctggtctgcggtgatgtc
ggctttggcaagaccgaggtggccatgcgcgccacctttgtggcagtgcagaacaatacc
caggtggcggtgctggtgccgaccaccctgctcgcccagcagcatttcgaatccttttcc
gaccgtttcgccgactggcccgtgaccatcgaagtgctgagccgcttccgcagccagaag
gaaaaaaccgatgtgctggcgcgcctcaaggctggcaaggtagatatcgttgtcggcaca
catcagctgctgcaggaaagcgtgcagtttcgtgacctgggtctggtggtggtggacgag
gaacaccgcttcggtgtgcgccacaaggaacgcctgaaagaaatgcgggcagaagccgat
atcctcacgctcaccgccacgccgatcccgcgcacgctgaacatggccatgtccggcatg
cgcgatatctccatcatcgccacgccgccggaaaaacggctgtcggtgaaaaccttcgtg
cagcagaagaacgacacggccatcaaggaagcgatcctgcgcgagctgctgcgcggcggc
cagctctactacctgcacaacgacatcgacagcatggcgcgcaccgccgagaccctgcgt
gagctggtgccggatgcacgcatcggcattgcccatggccagatgcgcgagcgtgacctg
gaacaggtgatgtcggatttctaccaccgccgtttcaacgtgctgctgtgcaccaccatt
attgaaaccggcatcgacgtgccgtcggccaacaccatcatcatcgagcgcgccgacaag
ttcggtctggcgcagttgcaccagttgcgcggccgcgtcggccgttcgcaccaccaggcc
tatgcgttcctgctcacccctcccccgaaagccatgaccaaggatgcggtgaaacggctg
gaagccatcgagcaggcctctgacctcggcgccggcttcatgctcgccagccacgatctg
gaaattcgcggtgccggcgaactgctcggcgaagaacagcacggccatatcgaatcgatc
ggcttctcgctgtacatggaaatgctcgaacaggcggtagaagccctcaagcgtggcgaa
cagccggacacccgcaagccgctgtccggtggtccggagatcaatctgcgcgtaccggca
ctgatccctgatgattacctgcccgatgtgttcagccgcctgacgctgtacaagcgcatt
gccagttgcgacaccggcgagcaactggacgagctgaaagtggagatgatcgaccgcttc
ggcctgctgccaccgcaggtgaagaacctgttccgcgtcaccgccctgcgccagcgcgcc
caggcgctgggtgtcagccgcatcgatgcaggggccgagcagggccggctcgagttctca
gaacgcaccgccattgatccactgaggctggtcaagctggtccaatccgggcctaatcgt
tataaattacaaggtgccagcgccctgcgcttcagcgtggatgccgaaaccggcgaagaa
cggttcgcagaagtggaagccctgctcgacaagctggcctga
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