Isoalcanivorax pacificus: S7S_12025
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Entry
S7S_12025 CDS
T03580
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
apac
Isoalcanivorax pacificus
Pathway
apac03030
DNA replication
apac03430
Mismatch repair
apac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
apac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
S7S_12025 (dnaE)
03430 Mismatch repair
S7S_12025 (dnaE)
03440 Homologous recombination
S7S_12025 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apac03032
]
S7S_12025 (dnaE)
03400 DNA repair and recombination proteins [BR:
apac03400
]
S7S_12025 (dnaE)
Enzymes [BR:
apac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
S7S_12025 (dnaE)
DNA replication proteins [BR:
apac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
S7S_12025 (dnaE)
DNA repair and recombination proteins [BR:
apac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
S7S_12025 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AJD48817
UniProt:
A0A0B4XRD9
LinkDB
All DBs
Position
complement(2729582..2733082)
Genome browser
AA seq
1166 aa
AA seq
DB search
MSTPAFIHLRVHTDYSLVDGVARVKPLVKQCVSRQMPAVAVTDDSNLFCLIKFYKAAQGA
GIKPIAGADLWLESTVLEEPARLCALVQNGTGYQNLTLLISRAWQHNQQRGRAVVRREWL
DELHEGLIFLSAARQGEVGQLLLAGKQEEATQVASGFRDLCGDRFYIEVQRTSRPGDEHC
LHASVALASALDLPVVATNDVRFLRQDDFEAHEARVCIHDGAAIDDPRRPRKYSDQQYLK
SAEEMAELFSDLPEALANTVEIARRCSLDIRLNENFLPDFPIPDGYTIEQFIQEESRRGL
DKRLALILDPAAEDYAARRKEYEDRLQFELDTINSMGFPGYFLIVSDFIRWAKENGVPVG
PGRGSGAGSLVAYSLEITDLDPIEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIAYVA
DKYGRAAVGQIITFGTMAAKAVVRDVARVQGKPYGLADRLSKMIPPTPGMTLEKALEQEE
VLRDFLNNSENSDQESAAEIWEMALKLEGLTRNVGKHAGGVVIAPGQLTDFAPLHCDEHG
ENLVTQFDKDDVEAAGLVKFDFLGLKTLTIIDWAVKAVNARRAREGEAPLDITQIPLEDS
PSFELLKRGETTAVFQLESQGMKELIKKLKPDVFEDIIALVALYRPGPLESGMVDNFINR
KHGREPLAYPDPQYQHELLKPILEPTYGVILYQEQVMQIAQVLAGYSLGGADMLRRAMGK
KKPEEMAKQREVFEEGARNKGIDGDLAIKIFDLVEKFAGYGFNKSHSAAYALVAYQTAWL
KVHYPAEFMAAVISADMQNTDKVVTFIDECKSMGLNVLPPDVNSCGYRFTVNQDGDIVYG
LGAIKGLGEGPIDAIVQAREQGVVFDDLFDFCRRVDMKRINRRSMEALVRAGALDKLGPT
QHHRDRAILMASLADATQAAEQDARNAEAGMSDLFGGGAEVSATPVAWKQARIWNDDLRL
NGERDTLGLFLTGHPIDQFEREVERFVSARLNALTPTGKGEAATIAGLVVAMRITRSKRS
GERMAFLTLDDKTGRVEVSVFGRTFAQYGDMVQKDVLLVVRGGVRHDDYTGGFSMSADEI
LDIGRARAMFARRLMVQAEVVSQLPNELRAALVPYVGGGCPVALRLRHPEGRGMLWLGDE
WRVNPEQALLDDLRNRFGDQAVAVEY
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
ttgagcacacctgcgttcattcatctgcgcgtccacaccgactattccctggtggatggc
gtggcgcgggtgaaaccgctggtcaagcagtgcgtgagccggcagatgccggcagtggcg
gtgaccgacgattccaacctgttctgcctgatcaagttctacaaggctgcacagggcgct
ggcatcaagccgattgccggcgccgatctctggctggaaagcaccgtgctggaagagccg
gcgcggttgtgtgcgctggtacagaacggcaccggctaccagaacctgaccctgctgatc
tcccgtgcctggcaacataaccagcagcgcggccgtgccgtggtcaggcgtgagtggctg
gatgaactgcacgaagggctgatcttcctgtctgccgcccgccagggtgaagtcggccag
ttgctgctggccggcaaacaggaagaagcgacacaggtggcgtccggctttcgcgacctg
tgcggcgaccggttttatatcgaagtgcagcgcaccagccgcccgggtgacgagcactgc
ctgcatgccagcgtagcgctggccagcgcactggacctgccggtggtggcaaccaacgat
gtgcgttttctcagacaggacgatttcgaggcgcacgaggcacgcgtctgtattcacgac
ggtgccgccatcgacgatccgcgccgcccgcgcaaatacagcgaccagcagtatctgaag
agcgcggaggaaatggccgagctgttcagtgacctgcccgaggcgctggccaataccgtg
gagattgcccggcgctgctcgctggatattcgcctcaacgaaaacttcctgccggatttt
ccgatccccgacggctacaccattgaacagttcatccaggaagaatcgcgccgggggctg
gacaagcggctggcgctgattcttgatccggcggcagaggactacgcggctcgccgcaag
gaatacgaggaccggctgcagtttgagctcgacaccatcaacagcatgggcttccccggc
tacttcctgatcgtgtccgactttatccgctgggccaaggaaaacggcgtgccggtgggg
ccgggccggggttccggtgcgggctcgctggtggcctattcgctggaaatcactgacctc
gatccgatcgaatacgacctgctgttcgagcgcttcctgaacccggagcgggtctccatg
cccgacttcgacgtcgacttctgcatggacggccgcgaccgcgtgattgcctacgtggcg
gacaaatacggccgtgccgccgtgggccagatcatcaccttcggcaccatggcggcgaag
gcggtggtgcgcgatgtggcgcgggtgcagggcaagccctacgggctggccgatcgcctg
tcgaaaatgatcccgccgacgccgggcatgacgctggaaaaggcgctggaacaggaggaa
gtgctgcgcgacttcctcaacaacagcgaaaacagcgaccaggaatcggccgccgaaatc
tgggaaatggcgctcaagctggagggcctgacccggaacgtgggcaagcatgccggcggc
gtggtgatcgcgcccggccagttgaccgacttcgcgccgctgcactgcgatgaacacggc
gaaaacctggtgacccagttcgacaaagacgacgtcgaggccgccggcctggtgaagttc
gactttctcggcctgaagacgctgaccatcatcgactgggccgtcaaggcagtgaatgcc
cgccgcgcgcgcgaaggcgaggcgccgctggacatcacccagattccgctggaagacagc
ccgtcctttgaactgctcaagcgcggtgaaaccaccgccgtgttccagctcgaatcccag
ggtatgaaagagctgatcaaaaagctcaagccggacgtgttcgaggacatcatcgcgctg
gtggcgctgtaccggccagggccgctggaatccggcatggtggacaacttcatcaaccgg
aagcacggccgcgaaccgctggcataccctgatccgcaataccagcacgaactgctgaaa
ccgatcctggagcccacctacggggtcatcctgtatcaggaacaggtcatgcagatcgcc
caggtactggccggttactcgctcggtggcgcggacatgctgcgccgggcgatgggcaag
aaaaagccggaagagatggccaagcagcgcgaagtgtttgaagaaggcgcgcgcaacaag
ggcatcgacggcgacctggcgatcaagattttcgacctggtggagaaattcgccggctac
ggcttcaacaagtcgcactccgccgcctacgcgctggtggcctaccagaccgcctggctg
aaggtgcattacccggccgagttcatggccgcggtgatctctgccgatatgcagaacacc
gacaaggtcgtgacctttatcgacgaatgcaaaagcatgggcctgaacgtgctgccgccg
gatgtgaacagttgcggctaccgttttaccgtcaaccaggacggcgatatcgtctacggc
ctgggtgccatcaagggcctgggtgaaggcccgatcgatgccatcgtgcaggcccgcgaa
cagggcgtggtgttcgacgacctgttcgacttctgccggcgcgtggacatgaagcgcatc
aaccgccgctccatggaagcgctggtgcgtgccggtgcactggacaagctcggcccgacc
cagcatcaccgcgaccgcgccatcctgatggcgagcctggcggacgccacccaggccgca
gaacaggacgcgcgcaatgcggaggccggcatgagcgacctgtttggtggcggggcggaa
gtcagcgccacgccggtggcctggaaacaggcccgtatctggaacgatgacctgcgcctg
aacggcgaacgcgacacactggggctgttcctcaccggccaccccatcgaccagttcgaa
cgcgaagtggaacgcttcgtcagtgcgcggctcaatgcgctgacgcccaccggcaagggc
gaggcggccaccatcgccgggctggtggtggcgatgcggatcacccgcagcaagcgcagt
ggcgaacgcatggcgttcctgacgctggatgacaagaccggccgggtggaagtgtcggtg
tttggccgcacctttgcccagtacggtgacatggtgcagaaggatgtgttgctggtggtg
cgtggtggtgtgcggcacgacgattataccggcggtttcagcatgtcggccgatgaaatc
ctcgatatcggccgcgcgcgggcgatgttcgcgcggcgcctgatggtgcaggcggaggtg
gtgtcacaactgccgaacgagctgcgtgcagcgctggtgccctatgtggggggcggctgc
cctgtggcgctgcggctgcggcacccggagggccgtggcatgctctggctcggtgacgag
tggcgcgtcaatcccgagcaggcgctgctggatgacctgcgtaaccgcttcggtgatcag
gccgttgcggtggaatactga
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