Isoalcanivorax pacificus: S7S_12985
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Entry
S7S_12985 CDS
T03580
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
apac
Isoalcanivorax pacificus
Pathway
apac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
S7S_12985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apac03019
]
S7S_12985
03009 Ribosome biogenesis [BR:
apac03009
]
S7S_12985
Enzymes [BR:
apac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
S7S_12985
Messenger RNA biogenesis [BR:
apac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
S7S_12985
Ribosome biogenesis [BR:
apac03009
]
Prokaryotic type
rRNA helicases
S7S_12985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
AAA_30
CMS1
adh_short
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AJD49009
UniProt:
A0A0B4XL87
LinkDB
All DBs
Position
complement(2949351..2951111)
Genome browser
AA seq
586 aa
AA seq
DB search
MSEQLTAQPGFDALELSPTVKQAIRALGYQTPSAIQQAIIPHILEGRDVIGQAQTGTGKT
AAFALPLISRFGDAPAGAVQVLVLAPTRELALQVTESFEKYGQQTPSLRVVTLCGGMDYR
PQTRALREGVQVVIGTPGRVVDHLKRGTLKLDALRCLVLDEADEMLRMGFIDDVEWVMEQ
TPAACQVALLSATMPPPIRKLAQRFLKSPQEITVATKTATVAAIRQRYLFINQRDKLDAL
VRVLETETFDGVILFARTKESTVELADFLQRAGFRATALNGDMAQPHREQVVEQIKGGRI
DILVATDVVARGLDVPRISMVLNYDIPFDGETYVHRIGRTGRAGREGDAILFVTPREKRM
LQNIERLTRQKVEEMALPTSAQINVVRKTRFKARIQATLDAGKLDLYREVLQEFLQESGA
EPLAVAAALARLAQGDASLYMEDRPAPVVRARQERPEREPRRAEGGQRDRGAPRKATAPE
AGMTRYRIEVGRTHGVKPSNIVGAIANEVKLNSSHIGRIDIFPQFSIVDLPDSLSESAIK
HLRTVWVAGQQMNIVVDGGVAPAAARRPGKSAPRREANAPRRRANG
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaacagttgaccgcccagcccggttttgatgcgctggagctttcccctaccgtc
aagcaggccatccgtgcgctcggttaccagacgccgtctgcgatccagcaggcgattatt
ccccatattcttgaaggccgtgacgtcatcggccaggcacagaccggcaccggcaagacc
gccgcgttcgcgttgccactgatttcccgctttggtgatgcgccggccggcgccgtgcag
gtgctggtcctggcgccgacccgtgagctggcgctgcaggttaccgagtcgtttgaaaaa
tacggccagcaaacgccgtcactgcgtgtggtcacgctgtgcggtggcatggactaccgc
ccgcagacccgcgccctgcgcgaaggtgtgcaggtggtgatcggtacgccgggccgggtg
gtcgaccacctcaagcgcggcaccctgaagctggacgcgctgcgctgcctggtgctggat
gaagccgacgaaatgctgcgcatgggctttatcgacgacgtcgagtgggtgatggaacag
accccggcagcctgccaggtggcgctgctctcggccaccatgccgccgccgatccgcaag
ctcgcccagcgtttcctgaaatccccgcaggaaatcaccgtggccaccaagacggccacc
gtggcggcgatccgtcagcgctatctgttcatcaaccagcgtgacaagctcgacgcgctg
gtgcgtgtactggaaaccgaaacctttgatggcgtgatcctgtttgcccgcaccaaggaa
agcaccgtcgaactggctgacttcctgcagcgtgccggcttccgtgccaccgcgctgaac
ggtgacatggcgcagccacaccgtgagcaggtggtcgagcagatcaagggcggccgcatt
gatatcctggtcgccactgacgtggtcgcgcgtggtctggacgtgccgcgcatctccatg
gtgctcaactacgatattccgtttgacggcgaaacctacgtgcaccgtatcggccgtacc
ggccgcgcggggcgtgagggggatgcgatcctgttcgtgacgccgcgtgaaaaacgcatg
ctgcagaacatcgagcgtctgacgcgccagaaagtggaagaaatggcgttgccgacctcg
gcgcagatcaatgtcgtgcgcaagacacgcttcaaggcacgtattcaggcgacgctggat
gccggcaaactggatctgtaccgtgaagtactgcaggaattcctgcaggaaagcggcgcc
gaaccgctggccgttgccgcagcactggcgcgcctggcccagggcgatgcttcgctgtac
atggaagaccgtccggcaccggtggtgcgtgcgcgtcaggagcgtcccgagcgtgagccg
cgccgtgcggaaggcggacagcgtgaccgtggtgcaccgcgcaaggccaccgcgccggaa
gcaggcatgacccgctaccgtattgaagtgggccgtacccatggcgtgaaaccgtccaac
atcgtgggtgccattgccaatgaggtgaagctcaacagcagccacatcggccgcatcgac
atcttcccgcagttcagcatcgtggatctgccggacagcctgtcggagtccgccatcaag
catctgcgcaccgtctgggtggcaggccagcagatgaatatcgtggtagatggcggtgtt
gcaccggcggcggcccgtcgtcccggcaagagcgctccgcgccgcgaggccaatgccccg
cgccgtcgtgccaatggctga
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