Isoalcanivorax pacificus: S7S_15700
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Entry
S7S_15700 CDS
T03580
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
apac
Isoalcanivorax pacificus
Pathway
apac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
S7S_15700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apac03019
]
S7S_15700
03016 Transfer RNA biogenesis [BR:
apac03016
]
S7S_15700
Enzymes [BR:
apac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
S7S_15700
Messenger RNA biogenesis [BR:
apac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
S7S_15700
Transfer RNA biogenesis [BR:
apac03016
]
Prokaryotic type
tRNA degradation factors
S7S_15700
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
RNA_pol_Rbc25
Motif
Other DBs
NCBI-ProteinID:
AJD49552
UniProt:
A0A0B4XTB7
LinkDB
All DBs
Position
complement(3525709..3528213)
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AA seq
834 aa
AA seq
DB search
MSKKTRRYRDPHAAREASNYERPVASRELILQVLNDEGRPLTRDQLEVLLQIGDDEQDRE
ALRRRLKAMLRDGQLVENRRGQYGIVERMDLIPGRVQGHRDGFGFVIPDEPGAEDLFISP
RQMLAVLDGDRVLVSAEGRNRFGKREGRIVEVIERANTDIVGRYIRTSAGPCIEPANRRI
TTDVLIADMNGLSLREGDHVRAEIMQYPDQRDPRLQARLLEVIASPDQPGMEVDVALRSH
DIPFVWPAAVEQEAAAIEDTVAEKAKKGRVDLRDLPLVTIDGEDARDFDDAVYIEKRRWR
RGWRLIVAIADVSHYVQPGAALDEEAHRRGTSVYFPNRVIPMLPEKLSNGLCSLNPDVDR
LCLFCEMQISGNGRITGFTFAEGVMRSRKRLTYTKVGAFIERPDSPEGQAVREELDKDLR
SMLTEYHALYQALRKRRDERGAIDFDTVETRILYDEQKKIRAIEPVRRNVAHMMIEEAML
AANICAARLLEQSGLPALFRNHEPPKQEKLQTLKEFLGPLGLTLAWSEKDGDAKPAVFQK
LSASIGERPDRILIQTVMLRSLTQARYAAENKGHFGLAYGAYTHFTSPIRRYPDLLVHRA
IRYLIRSGEVSKHTHNPGKLAKLPRQRILPYDQAAMVQLGEHCSMTERRADDATRDVVQW
LKCQFMQQHIGDVFEGVISGVTNFGLFVQINELYVDGLVHVANLDSDYYHHDDKRHMLVG
ESSGRQFRLGDAVRVQVAAVHVEDRKIDLQLAQDQPRQGRKQGGVRQALAEGRFPKDGGV
PAKGKGNQGKRSQGKRAPDKKAAARPGKQSGGKAAGSQGSRQGTAKSGKPARRK
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaaaaccagacgctaccgtgatccgcacgcggcccgcgaagcgtcgaactat
gaacgcccggtggccagccgggaactgatcctccaggtgctgaatgacgaggggcgcccg
ctgacccgtgatcagcttgaagtgctgttgcagatcggcgacgacgagcaggaccgcgag
gcgctgcgccggcgcctgaaagccatgctgcgtgatggccagctggtggagaaccgccgt
ggccagtacggcattgtcgagcgcatggacctgattcccggccgtgtgcaggggcaccgc
gatggcttcggttttgtgattccggacgagccgggcgctgaagacctgttcatctccccg
cgccagatgctggccgtgctggacggcgaccgggtgctggtcagcgccgagggccgcaac
cgtttcggcaagcgcgaggggcgtattgtcgaggtcatcgagcgcgccaacacggacatc
gtgggccgctacatccgcacctccgccgggccatgtatcgagccggccaaccgccgcatc
accaccgatgtgctgatcgccgacatgaacgggctgagcctgcgtgaaggtgaccatgtg
cgggccgagatcatgcagtaccccgaccagcgcgacccgcgcctgcaggcgcggctgctg
gaagtgattgcctcaccggaccagccgggcatggaagtggacgtggcgctacgcagtcac
gacatcccgtttgtgtggccggctgccgtggagcaggaagcggccgccatcgaggacacc
gtggcggagaaggccaagaaaggccgcgttgacctgcgcgatctgccgctggtcaccatt
gatggcgaggacgcgcgcgacttcgacgatgccgtctatatcgagaagcgccgctggcgg
cgtggctggcggctgatcgtggccattgccgacgtgtcgcactacgtacagcccggcgcg
gcgctggacgaagaggcgcaccgccgtggcacctcggtgtatttccccaaccgggtgatc
ccgatgctgccggagaaactctccaacggcctgtgctcgctgaacccggatgtggaccgc
ctgtgcctgttctgcgaaatgcagatttccggcaatggccgcatcaccggctttaccttt
gccgagggcgtgatgcgctcgcgcaagcgcctgacctataccaaggtcggtgccttcatt
gaacggccggacagtccggaagggcaggccgtgcgcgaggaactggataaagacctgcgc
agcatgctgaccgagtatcacgcgctgtaccaggcactgcgcaagcggcgtgacgaacgc
ggtgcgattgatttcgataccgtggaaacacgcatcctgtacgacgaacagaaaaagatc
cgcgccatcgagccggtgcgtcgcaacgtggcgcacatgatgatcgaggaggcgatgctg
gcggcgaacatctgtgccgcacgcctgctggagcagtccggcctgccggccctgttccgt
aaccacgagccgccgaagcaggaaaaactgcagacgctgaaggagttcctcggcccgctg
ggcctgaccctggcctggtcggaaaaagacggcgacgccaagccggcggtgttccagaaa
ctgtcggcatccattggtgagcggcccgatcgcattctgatccagaccgtgatgctgcgc
tcgctgacccaggcgcgctatgccgccgagaacaagggccatttcggtctggcctacggc
gcctatacgcactttacctcgccgatccgccgctatccggacctgctggtgcaccgggcc
atccgctatctgattcgcagtggcgaagtgtccaagcacacccacaatccgggcaagctg
gcgaagctgccgcgccagcgcatcctgccgtatgaccaggccgccatggtgcaactgggc
gaacactgctcaatgaccgagcgccgggccgatgacgccacccgtgatgtggtgcagtgg
ctcaagtgccagttcatgcagcagcacattggcgatgtgttcgagggcgtgatcagcggc
gtgaccaatttcggcctgttcgtgcagatcaacgagctgtatgtcgacggtctggtgcat
gtggccaacctcgacagcgactactaccaccacgacgacaagcgccacatgctggtgggg
gaatcctccgggcgccagttccgtctcggcgacgccgtgcgggtgcaggtcgctgccgtg
catgtggaagatcgcaagatcgacctgcagctggcgcaggaccagccgcgccagggccgc
aaacagggcggtgtgcgccaggcgctggccgagggccgtttcccgaaagacggcggcgtg
ccggccaagggcaagggcaaccagggcaagcgctcccagggcaagcgggcgccggacaaa
aaggcggctgcgcgaccgggcaagcagagcggcggcaaggccgccggctcccagggcagc
aggcagggcaccgcgaaaagcggcaagccggcacgccgtaagtaa
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