Avibacterium paragallinarum: EIA51_01335
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Entry
EIA51_01335 CDS
T05728
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
apag
Avibacterium paragallinarum
Pathway
apag02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
apag00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EIA51_01335 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apag03021
]
EIA51_01335 (rpoD)
Transcription machinery [BR:
apag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EIA51_01335 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GBP_C
Motif
Other DBs
NCBI-ProteinID:
AZI15199
LinkDB
All DBs
Position
276778..278640
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AA seq
620 aa
AA seq
DB search
MEQNPQSQLKLLIAQGKEQGYLTYAEVNDHLPEELVDADQIEDIIQMINDMGIQVLETAP
DADDLMLNENITDEDAVEEATQVLSSVEAEIGRTTDPVRMYMREMGSVELLTREGEIDIA
KRIEEGINEVQTAIAAYPEALNDLLRQYALVEEGGMRLADIITGFVDPNAVVEETTDETD
VLSEDDEESVVSTSIEEEEEDEEGDDSGTSDDSDTDNAIDPEVAREKFTALKMQHQKTLE
AIVKHGRHKKQARDQIQVLAEIFTQFRLVPKQFDVLVLAMRNMMKRVRQQERHIQKMAVD
NARMPKGMFQKEFIGHETKEAWLDKALNAGKGWSEKLAQYEVQIRQSIENLIQIEQETGL
TIAQIRDICDAVSQGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE
MGREASPEELAERMGMPEEKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDNTLELPLD
SATAQSLKAATHEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLRHPSRSETLRSFLDE
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaatccacaatctcagttaaaattgttaatcgcacaggggaaagagcaaggc
tatttaacctatgccgaagtgaacgaccacttgccagaagaacttgttgatgcggatcag
atcgaagatattattcagatgatcaatgatatgggtattcaagtgctggaaactgcacct
gatgccgatgatttgatgctaaatgaaaatattaccgatgaagatgcagtagaagaagcg
actcaagtattatcaagcgtagaagcagaaatcgggcgaactaccgaccctgtgcgtatg
tatatgcgtgaaatgggcagtgtggagcttttaacccgagaaggtgaaattgatattgca
aagcggatcgaagaaggaattaatgaagttcaaacggcgattgcagcttacccagaagca
ttgaatgatttacttagacaatatgcactggttgaagaagggggaatgcgtctggctgac
atcatcactggatttgttgaccctaacgcagtagttgaagaaacaacagatgaaactgat
gtgctgtctgaggacgatgaagaaagcgtggtttctacctcaattgaagaagaggaagaa
gacgaagaaggcgatgatagtggcacttccgatgatagtgatacagacaatgcgattgat
cctgaagtggcacgggaaaaatttaccgcattaaaaatgcaacatcaaaaaaccttagag
gcgattgttaagcacggtcgtcataaaaaacaagctcgcgatcaaatccaagtgttggct
gagattttcactcaattccgcttagtgccgaaacaatttgatgtgcttgtgctagcaatg
cgtaatatgatgaagcgagttcgtcagcaagaacgccatattcaaaaaatggcagttgat
aatgctagaatgccaaaaggaatgtttcaaaaagaatttattgggcacgaaaccaaagag
gcttggttagacaaagctctcaatgcaggtaaaggctggtcagaaaaattagctcaatat
gaagtgcaaattcgccaatctatcgaaaatttgattcaaattgaacaagaaacagggcta
actatcgcacaaattcgcgatatttgtgatgcggtttcacaaggggaattaaaagctcgc
cgtgcgaaaaaagaaatggttgaggcgaacttgcgtttggtgatttctattgcgaaaaaa
tataccaaccgcggtttgcaattcttagacttgatccaagaagggaatattggattgatg
aaagcggtggataaatttgaatatcgccgtggatataaattctcaacctatgccacttgg
tggattcgtcaagcaattacccgttcaattgccgaccaagcaagaaccattcgtatccca
gtgcatatgattgaaacgattaataagttgaatcgtatttctcgtcaaatgttgcaagaa
atgggacgcgaagcctcgcctgaagagctggcggaaagaatgggaatgcctgaggaaaaa
attcgcaaagtcctcaaaatcgccaaagagccgatttcaatggaaaccccaatcggtgat
gacgacgattcccatttaggcgattttattgaagataacacccttgaattaccgttagat
tcagctacggcacaaagcctaaaagcggctacccacgaagtcctagaaggtttaacccca
cgcgaggcaaaggtgctaagaatgcgttttgggattgatatgaacaccgaccatacactt
gaagaggtaggtaaacaatttgatgtaactcgtgaacgtatccgtcaaattgaagctaaa
gctttgcgtaaattacgccacccaagtcgctcagaaaccctgcggagtttcttagacgaa
tag
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