Avibacterium paragallinarum: EIA51_02605
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Entry
EIA51_02605 CDS
T05728
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
apag
Avibacterium paragallinarum
Pathway
apag03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EIA51_02605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apag03400
]
EIA51_02605
Enzymes [BR:
apag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EIA51_02605
DNA repair and recombination proteins [BR:
apag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EIA51_02605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
SWI2_SNF2
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AZI13627
LinkDB
All DBs
Position
488474..491914
Genome browser
AA seq
1146 aa
AA seq
DB search
MMYFDINLPTQSNDHKILANVIAGSDTLALAEIAQSHQGLTVVVTPDTRSAVRLSKVLAE
FVSQPVTFFPDWETLPYDSFSPHQDIISSRLSALFHLQNSKNGIFILPISTLMQKVCPPE
YLQHNVLLIKKGDRIVINDFRLKLENAGYRAVEQVLEHGEYAVRGALLDLFPMGSAVPFR
LDFFDDEIDSIRTFDVDTQRTLEEIPSIRLLPAQEFPTDHKGIEFFRTKFRETFGEIRRD
PEHIYQQVSKGTLAAGIEYWQPLFFEQMATLFDYLPEQTLFVDFESNQQQGERFYQDCEQ
RYESRRVDPMRPLLPPDQLWLPIDQINHQLKHFPKITLKAERVARASVRQQNLPVQALPD
LSLKLQQKEPLLPLQQFMTQFNGDIVFCVETEGRRETLLDLLSPLKLRPKQIAHLSDLQE
KQSLLICSQDRGFIVEKGADSLALITETELLGERVQQRSRDRQKSVNPDTLIRHLAELKI
GQPVVHLDHGVGRYAGLVTLENAGITSEFLLLDYANDAKLYVPVSSLHLISRYVGGSEET
APLHKLGSDAWVKSRQKAAEKIRDVAAELLDVYALRESQKGFAFHYDRDEFMQFSATFPF
EETLDQMTAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTT
LLAQQHYENFKDRFANLPVNVEVLSRFKTAKEQKALLADLAEGKIDILIGTHKLIQPEVK
FKDLGLLIIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMAMNGIRDLSIISTP
PARRLTIKTFVRQADDLIIREAILREILRGGQVYYLHNDVASIENCAENLAALVPEARIV
IGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADRFGLAQLHQL
RGRVGRSHHQAYAYLLTPPPKAMTKDALKRLEALESLDNLGAGFMLATQDLEIRGAGELL
GDEQSGQIESIGFSLYMELLESAVRALREGRELSLDELTQRQVEIDLRIPALLPEDYLGD
VNMRLGFYKRIAGAESEQELEELKVELIDRFGLLPTPAKNLLRIAQLRLQAKPLQIIRIE
ATAQGGFIEFSPKASLDPTKFLQLIQQSPAVYRFDGPTKFRFHRDLTESKVRLDFVAELL
RTLRAE
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgatgtacttcgatatcaatctcccaacccaatccaatgatcacaaaattttagccaat
gtgattgcaggtagcgataccttagcccttgcagaaattgcacagagccatcaaggactt
accgtagttgtaacgccagacacgcgaagtgcggtgcgtttatcgaaagttttggcggaa
ttcgtttcgcagcctgttacctttttccccgattgggaaaccttaccttatgacagcttt
tcaccgcatcaagatattatttcttcacggctcagtgcgttattccatttgcaaaattca
aaaaacggcatttttattttgccgatcagcactttaatgcaaaaagtttgcccgcctgag
tatttgcaacacaacgttttactgattaaaaaaggcgatcgcattgtgattaatgatttc
cgcttaaagctagaaaatgcaggttatcgtgcggtggaacaggtgttggaacacggtgaa
tacgcggtgcgtggcgcgttgctagatttgttcccaatgggaagtgcggtgccttttcgc
ttggatttttttgatgatgaaattgatagcattcgcacgtttgatgtggatacgcaacgc
acgctggaggaaattccctcaattcggttgttgcccgcccaagagttccccactgatcac
aaaggtattgaatttttccgcaccaaattccgtgaaacctttggcgaaattcgccgtgat
cctgagcatatttatcaacaggttagcaaaggcacgctggcagcagggattgagtattgg
caaccgctgttttttgaacaaatggccaccttatttgattatttgcctgaacaaacgcta
tttgttgattttgagagtaaccagcaacaaggtgagcgtttttatcaagactgtgaacag
cgttatgaaagccgccgtgttgatccaatgcgtcctttattaccgccagatcagctttgg
ttgcccattgaccaaataaatcatcagctcaaacattttcctaaaatcaccttgaaagcg
gaaagagtggctcgagcttctgtgcgtcagcaaaacttgcctgtgcaagccttgccagat
ttaagcctaaaattgcaacaaaaagaaccgctcttacctttgcaacaatttatgacgcag
tttaatggtgatattgtcttttgtgtggaaacagaagggcggcgcgaaaccttgcttgat
ttgctcagtccgttgaaattaagaccaaaacaaattgcgcatctttcagacttgcaagaa
aagcaaagtttgctgatttgtagccaagatcgtggttttattgtggagaaaggggcggat
tcccttgcgttgattacggaaacagaattgctcggcgaacgtgtacagcaacgtagtcgc
gatcgacaaaaatccgtcaatcctgatactttaatccgacatttagcagagctgaaaatt
ggtcagccagtggtgcatttagatcacggcgtagggcgttatgcgggactggttacctta
gaaaacgcaggcatcacctccgaatttttgttactcgactatgccaacgatgccaagttg
tatgtgccagttagctcattgcatttgatcagtcgctatgtaggtggctcggaagaaacc
gctcccttgcataaactgggtagcgatgcgtgggtgaaaagtcggcaaaaagcagcggaa
aaaattcgcgatgtggcagcggaattgcttgatgtgtatgccttgcgagagtcgcaaaaa
ggctttgcttttcattatgatcgcgatgaatttatgcagttttctgccactttccctttt
gaggaaaccctggatcaaatgaccgcgattaacgctgtgatttccgatatgtgtcagccc
aaagcgatggatcgtctagtttgtggtgatgtgggatttggtaaaacagaagtggcaatg
cgtgccgcatttttggcggtaatgaaccataaacaagtggcagtgcttgtgccgaccacg
cttcttgcccagcaacattacgagaactttaaagatcgttttgccaacttgccagtaaat
gtagaagtgctttcacgctttaaaacggcaaaagagcaaaaagccctgcttgctgattta
gcggaaggcaagattgatattctaatcggtacgcacaaactgattcagccagaagtgaaa
tttaaagatctcggcttgctgattattgatgaagaacaccgtttcggcgtgcgtcaaaaa
gaaaaaatcaagcaactgcgcgccaatgtggatattctcaccctgacggcaacgccaatt
ccacgcaccttaaatatggcgatgaatggcattcgtgatctttctattatctccacgcca
cctgcgcgccgtttaaccattaaaacctttgtgcgacaggccgatgatttaattattcgt
gaagcaattttgcgtgaaattctgcgtggcggacaagtttattatttgcataatgatgtg
gcgagcattgaaaattgtgcggaaaatcttgccgcacttgtaccagaagcacgcattgtg
atcggccacgggcaaatgcgagagcgtgagctagaacgtgtgatgtctgatttttatcat
cagcgctataacgtgctagtttgttccactattattgaaacagggattgatgttccaacg
gcgaacaccatcatcattgaacgcgcggatcgctttggcttggcacaattacaccaactg
cgtgggcgagtggggcgttcgcatcatcaagcctatgcctatttactcacgccaccgcca
aaagcaatgacaaaagatgccttgaaacgccttgaagccttggaaagtctggataatctc
ggggcaggctttatgttggcaacgcaagatttagaaattcgcggagcgggcgaattgcta
ggcgatgaacaaagcggacaaattgaaagcattggtttctcgctatatatggagctgtta
gaaagtgcagtgcgtgccttgcgggaaggacgtgagctatcccttgatgaactcacgcaa
cgccaagtagagattgatttacgtattcccgctttgctcccagaggattatttaggcgat
gtgaatatgcgtcttggcttttataaacgcattgcgggggcagaaagtgagcaagagctt
gaagaattaaaagtggaactcattgatcgctttggtttgttgccaacgccagccaaaaat
ttattacgcatcgcacagctccgcttacaagccaagccattacaaatcattcgtattgaa
gccaccgcacagggaggatttatcgagttttcacccaaagcaagccttgatccaacaaaa
ttcttgcaacttattcagcaatcgccagcagtgtatcgctttgacggaccaacgaaattt
aggtttcatcgggatttaactgaaagcaaagtgcggttagattttgtggcagaattgctc
cgtactttgcgggctgaataa
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