Avibacterium paragallinarum: EIA51_08160
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Entry
EIA51_08160 CDS
T05728
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
apag
Avibacterium paragallinarum
Brite
KEGG Orthology (KO) [BR:
apag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apag03019
]
EIA51_08160 (hrpA)
Enzymes [BR:
apag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EIA51_08160 (hrpA)
Messenger RNA biogenesis [BR:
apag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EIA51_08160 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
nSTAND3
HA2_N
NACHT
T2SSE
ResIII
AAA_22
AAA_23
PhoH
ABC_tran
FtsK_SpoIIIE
Zeta_toxin
AAA_25
SRP54
TsaE
Motif
Other DBs
NCBI-ProteinID:
AZI14583
LinkDB
All DBs
Position
complement(1710979..1714887)
Genome browser
AA seq
1302 aa
AA seq
DB search
MKNTKHKQPFSPLQKALFAQLTEMMNVDYRRLQGRIKGLHQIKNPQTQEKVAAEIQLQIQ
QAQARLQQRESAVGKIEFPENLPVSQRKDEILKAIEQNQVVIIAGETGSGKTTQLPKMCL
ALGRGKEGLIGHTQPRRIAARSVATRIAEELYCELGDLVGYKVRFNDQISDNTQIKLMTD
GILLAEIQSDPFLNQYDTLIIDEAHERSLNNDFILGYLKQLLPKRPDLKVIITSATIDVE
RFSHHFNNAPIIEVSGRTYPVEVRYRPVAETEEQDQIQSILNAVDELQAEGWGDILIFLN
GEREIRDTAEALEKQHLKHTEILPLFARLSAQEQNKIFHPSGLNRIVLATNVAETSLTVP
GIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEEDFN
QRSEFTDPEILRTNLASVILQMTALGLDDISAFPFVDAPDKRHIQDGIKLLEELQAFQIV
KTKHGEKRQLTQIGRQLAQLPVDPRLGKMLLSAVNSNALHEVMIIVAALSIQDPRERPQE
KQQAADEKHRRFADKKSDFLAFLNLWNYLQEQQKALSKNQFRRLCQKDYLSYIRVREWQD
IYHQIRLTVREMGLPINSQVAEYPQIHTALLSGLLSHIGMKEAEKQQYLGARNAHFAIFP
NSVLFKKQPKWCMAAELVETSKLWGRMVAEIDPEWIEPLAQHLVKKSYAEPRWSKSKGAV
IANEKVTLYGVPIVASRPVNYGKIDPAVSREIFIQSALVEGNWHTKHTFFLQNQRLIREV
EELEHKTRRRDILVDERRLFEFYDQRIGTEVVSQKHFDTWWKKARQKDPELLNFEKAFLT
NDNANVSELDFPNFWHQGNLKLKLSYQFEPGMEADGVTVHIPLPLLNQVEMQGFDWQIPG
LRKELIIALIKSLPKTLRRHFVPAPNYAEAFLGRVNDVDKPLLETLSAELRKITGVYVAP
DEWNLAQIPPHLTMTFRVVNEKGKKIAESKNLDELKVSLKAQVQETLSAVADEGIEQTGI
HLWNFDQLPQYYEQKKQGFTIKAYPAIVDEKDSVGIKLFETEFEQAVAMEQGLRRLLLLN
VPSPIKYLHEKLPNKSKLGLYFTPFGKVLELIDDCIACAVDKLVQDFGGFVWNEQDFERL
KDYIRANLNETTVDIAKQVEEILTLVFEINKRLKGKMDFTLAFALSDIKAQINHLIYPNF
VQKTGYQRLPDLLRYLQAIDKRIDKLLQDPNRDRAAMLRVENVEKAYQQLLLKLPKSKPI
PAEVAEIPYMIEELRVSLFAQQLGTKYPISDKRILNVINEVG
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatacaaaacacaaacaaccatttagcccattacaaaaagccttatttgctcaa
ttaacggagatgatgaacgtagattatcgccgtctgcaagggcgaattaaagggctacat
caaatcaaaaatccacaaacccaagaaaaagtcgcagcagaaattcaattacaaattcag
caagcgcaagcacgtttacagcaacgagaaagtgcggtgggaaaaattgaatttcctgaa
aacttgccagtaagccagcgcaaagatgaaattctcaaagccattgagcaaaaccaagta
gtgattatcgcgggggaaacggggtcaggtaaaaccacccaattgccgaaaatgtgcctt
gcattaggtcgtggaaaagaaggcttgattgggcatactcagcctcgccgtatcgctgcg
agatcggtggcgactcgcattgccgaagagctatattgtgagctaggcgatttagtgggt
tataaggttcgcttcaacgatcaaattagcgataatacgcaaatcaaattaatgacagat
ggtattttgctcgctgaaattcaaagtgatccttttttaaatcaatacgatactttgatc
attgacgaagcccacgaacgcagcctgaataacgattttattcttggttatttaaaacag
ctgctgccaaaacgcccagatttaaaagtgattatcacctcggcaaccattgatgtggag
cgtttttcgcatcattttaataatgcgccaattattgaagtttcggggcgaacttatcct
gtggaagtgcgttatcgccctgtggcggaaacggaagaacaagatcaaatccaatctatt
ctcaatgctgttgatgaattgcaggcagaggggtggggcgacattttgattttcctaaat
ggtgagcgtgaaattcgtgacaccgcagaagccttggaaaaacagcacttaaaacacact
gaaattttaccgctctttgctcgcttatcggcacaagagcaaaataaaatttttcatcca
agtggcttaaatcgcattgtgcttgccaccaacgtggcagaaacttcactgaccgttcca
gggattaaatatgtgatcgaccccggcacggcacgcatttcccgttatagctaccgcacc
aaagtgcaacgcttgcctattgagccgatttcgcaagcttcagcaaatcaacgcaaaggg
cgttgtggacgggtatccgaagggatttgtatccgcctttattcagaagaggattttaat
cagcgctcagaatttaccgatcctgaaattttgcgtactaatctcgcctcggtcatttta
caaatgaccgctcttgggctagatgatattagtgcatttcctttcgtcgatgcccctgac
aaacgtcatattcaagatggcattaagttgttggaagaattgcaagccttccaaatcgtg
aaaactaagcacggcgaaaaacgccagcttacgcaaattggacgccagcttgctcagcta
cctgttgatccccgcttgggtaaaatgttgctgagtgctgtaaacagcaatgcgttgcac
gaagtgatgatcattgtggcggcactttcaattcaagatcctagagagcgtccacaagaa
aaacaacaagcggcagatgaaaaacatcgccgttttgcagataaaaaatcagattttctc
gcattcttaaatttgtggaattatctgcaagaacagcaaaaagccttaagcaaaaatcag
ttccgccgtttgtgtcagaaagattatttgagttatatccgcgtacgcgaatggcaggat
atttatcatcaaattcgtttaaccgtgcgtgaaatgggcttaccgattaattcgcaagta
gcagaatatccgcaaattcacaccgcacttttatcgggtttgctttctcatattggtatg
aaagaagcggaaaaacagcaatatttaggcgcaagaaatgcccattttgcgatttttcct
aattccgtgctattcaagaagcagcccaaatggtgtatggcagcggaattagtggaaacc
tcaaaattatggggacgaatggtggctgagatcgatcccgaatggatcgagccattggca
cagcatttagtgaaaaaatcttatgccgagcctcgctggtcaaaatccaaaggggcggtt
atcgccaatgaaaaagtcaccctttatggtgtgccgattgtggcaagtcgcccggtgaac
tatggcaaaattgatccggcggtaagccgtgaaatttttattcaatctgccttggtggaa
ggaaattggcacacgaaacacaccttcttcttgcaaaatcaacggctgattcgcgaagtg
gaagagttagagcacaaaacgcgccgccgagatattttggtggacgaacgccgtttattt
gaattttatgatcaacgcattggcacagaagtggtgtcgcaaaagcattttgatacttgg
tggaaaaaagcgcggcaaaaagatcctgaattgctgaattttgaaaaagcctttctcacc
aatgacaacgccaatgtcagcgagctagatttccctaatttctggcatcaaggcaattta
aaattaaagcttagctatcaatttgaaccgggtatggaagccgatggcgtaaccgtgcat
attcctttgccactgcttaaccaagtggaaatgcagggttttgactggcaaattccgggt
ttacgcaaagagttgattatcgccctgattaaatctttaccaaaaacattacgccgccat
tttgttccagcaccgaattatgcggaagcctttcttgggcgcgtgaatgatgtggacaaa
cccttgctagaaacgctgtctgcagaattacgcaaaatcacgggtgtttatgtagcccct
gatgaatggaatctcgcgcaaattccaccgcacttaacaatgacattccgcgtggttaat
gagaaaggtaagaaaattgccgagagcaaaaatttagatgaactcaaagtgagtttgaaa
gcgcaagtgcaggaaaccttgtcagcggtggcagacgaaggcattgagcaaacagggatt
catttatggaatttcgatcaattaccacaatattatgagcagaaaaaacaaggctttacc
atcaaagcctatcctgccattgtggacgaaaaagattctgttgggatcaaattatttgaa
acagaatttgagcaggctgtcgcaatggaacaggggctacgccgcttattattgcttaac
gtgccatcgccgataaaatatctacacgaaaaactgcctaacaaatcaaaattagggctg
tatttcacaccatttggcaaagtgctggaattgattgacgattgtatcgcctgcgctgtg
gataaattggtgcaagatttcggtggttttgtgtggaatgagcaggattttgaacgccta
aaagactatattcgagctaatttaaacgaaaccacagtggatattgccaaacaggtggaa
gagattctgacgctcgtgtttgaaatcaacaaacgcttaaaaggcaaaatggatttcacc
ttagcctttgccctttcagatattaaagcgcaaattaaccatcttatttacccaaacttt
gtgcagaaaacaggctatcaacgcttgccagatttattacgttatttgcaagccattgat
aaacgcattgacaaattattgcaagatcccaaccgtgatcgtgccgcaatgttgcgagta
gaaaacgtagaaaaggcgtatcagcagttattattaaaattgccaaaatccaagccaatc
cctgcagaagtggcagagatcccttatatgatcgaggaactacgcgtcagcctattcgcc
caacaactcggcacgaaatatcctatttcagataaacggattttgaatgtgattaatgag
gtggggtag
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integrated database retrieval system
