Avibacterium paragallinarum: EIA51_10580
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Entry
EIA51_10580 CDS
T05728
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
apag
Avibacterium paragallinarum
Brite
KEGG Orthology (KO) [BR:
apag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
apag03009
]
EIA51_10580 (srmB)
Enzymes [BR:
apag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EIA51_10580 (srmB)
Ribosome biogenesis [BR:
apag03009
]
Prokaryotic type
rRNA helicases
EIA51_10580 (srmB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_11
AAA_19
Cas3-like_C_2
DUF6930
AAA_22
Terminase_6N
HypF_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AZI15000
LinkDB
All DBs
Position
2219317..2220633
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AA seq
438 aa
AA seq
DB search
MNLAQFEELDLAPELLKALAKKGYQRPTAIQLESIPAAMAERDVLGSAPTGTGKTAAFLL
PALQHLLDNPRRKPGTPRVLVLTPTRELAMQVAEQAEQLAQFTNLDITTITGGVAYQNHG
EVFNSNQDLVVATPGRLLQYIQEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRW
RKQTLLFSATLEGELLMDFAGRLLNDPVQIDAEPSRRERKKIQQWYYHADSDEHKVKLLA
RFIEQEKVSKGIIFVCRRETVRELSDILRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVT
VLVATDVAARGIDIDDISHVMNMDLPYSADTYLHRIGRTARAGKKGVAVSFVEAHDYKLL
GKIKRYTEELLKPRIIEGLEPRTKAPKDGEVKKVSKKQKARLKKIRDDKKKNEQQKKAKL
RHKDQKNIGKRRQPKNKL
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaacttagcacaatttgaagaattggatctcgccccagaattattaaaagccttagcg
aaaaaaggctaccaacgccccaccgccattcagttggaaagcattccagcggcaatggcg
gagcgagatgtgctaggttcagccccaacgggtacggggaaaaccgccgctttcttattg
cctgccttgcaacatttgctagataatccacgccgtaaacccggtacgccaagagtgttg
gttctcaccccaacccgtgagttagcgatgcaagtggcggagcaagcggagcaattagcg
caatttaccaaccttgatattaccaccatcacaggcggtgtggcctatcaaaaccacggt
gaagtgtttaacagcaaccaagatttagtggtcgccacgccggggcgtttgctgcaatat
attcaagaagaaaattttgattgtcgcgcggtagaaattctgatttttgacgaagcggat
cgtatgctgcaaatgggctttgggcaagatgcggaaaaaatcgctgccgaaacgcgctgg
cgtaaacagaccttgctgttttctgccacattggaaggggaattgctaatggattttgca
gggcgattactcaatgaccctgtgcaaattgatgcagagccaagtcgccgtgagcgtaaa
aaaatccaacaatggtactatcacgcagacagcgatgagcataaagtgaaattgctcgct
cgttttattgagcaggaaaaggtgagcaagggcatcattttcgtttgccgccgtgaaacc
gtgcgagagctttccgacatcttgcgtaaacgtggcattcgcagtacctatttagaaggg
gaaatggcacaaacgcaacgcaataatgctattgataaactcaaaaacggtgtggtaacc
gtgctagttgccaccgatgtggcggcgcgtgggattgatattgatgacatcagccacgtg
atgaatatggatttgccttacagcgcagacacttatttacaccgcatcggacgcaccgcc
cgcgctggcaaaaaaggggtggcggtgtctttcgtagaagcccacgattataaactgctc
ggcaaaattaagcgttatactgaggaattgcttaaacctcgcattattgaaggcttagaa
ccaagaacaaaagcccctaaagacggtgaagtaaaaaaagtgagtaaaaagcaaaaagct
cgtctcaaaaaaatacgcgatgataagaaaaaaaatgaacaacagaaaaaagctaaacta
cgtcataaagatcaaaaaaatattggaaaacgtcgccaaccaaagaataaattgtag
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