Aquidulcibacter paucihalophilus: KB221_03920
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Entry
KB221_03920 CDS
T09139
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
apah
Aquidulcibacter paucihalophilus
Pathway
apah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KB221_03920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apah03019
]
KB221_03920
Enzymes [BR:
apah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KB221_03920
Messenger RNA biogenesis [BR:
apah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KB221_03920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WIY70179
LinkDB
All DBs
Position
complement(804723..806225)
Genome browser
AA seq
500 aa
AA seq
DB search
MSKTFDTFGLNPALLQALASEGYTTPTPIQAQAIPDVMAGKDLLGIAQTGTGKTAAFALP
ILHRLAANRVAPKPRTARVLILSPTRELASQIAESFKTYGRHLGFKVAVVFGGVKYGPQE
RAIQAGLDVLVATPGRLLDHMQQKTLDLSCTEIFVLDEADQMLDLGFVKPIRQIVSRIPA
MRQNLFFSATMPTEIGKLAGELLKDPVKVSVTPQATTVQRISQSIIHIEQGRKRALLTEM
FADPHYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLAAFKAGKLRVL
VATDIAARGIDVDGVSHVLNFELPYVPEAYVHRIGRTARAGADGTAISFVAGDEMKLLRD
IEKVTRQKIPSTDRRNDKSLALLDQSIMASGVKSKASMPDDGRGDRQQQRGPRNPRRDGV
KLEGGGQPHRVRKAGPGRDARPIPERAFDPLARERPRSTNNDPRHTSAPATASAKPDGEI
KRRPRRRKPSNGGKGYATQG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagacattcgacaccttcggcctcaacccggccctccttcaggcgctcgcgtcc
gaaggctacaccacccccaccccgatccaggcccaggccatccctgacgtcatggccggc
aaggacctgctgggcatcgcccagaccggcaccggcaagacagcggccttcgccctgccg
atcctgcaccgtctggccgccaaccgcgtcgcgcccaagccgcgcaccgcgcgcgtcctc
atcctgtcgcccacccgcgaactggccagccagatcgccgagagcttcaagacctacggc
cgtcacctcggcttcaaggtcgcggtcgtcttcggcggcgtgaaatacggcccgcaggaa
cgcgccatccaggccggcctcgacgtcctggtcgccacccccggccgtctgctggaccat
atgcagcagaagacgctggacctgtcctgcaccgagatcttcgtcctcgacgaggccgac
cagatgctggacctcggcttcgtcaagccgatccgccagatcgtcagccgcatcccggcc
atgcgccagaacctgttcttctcggccaccatgccgaccgagatcggcaagctggccggc
gaactgctcaaggacccggtcaaggtgtctgtgacgccccaggccaccacggtccagcgc
atcagccagtcgatcatccacatcgagcagggccgcaagcgcgccctgctgaccgagatg
ttcgccgatccgcactacacgcgctgcctggtcttcaccaagaccaagcacggcgccgac
aaggtcgcggcctatctggaagccggcggcgttgaagccggcgccatccacggcaacaag
agccagccccagcgtgaacgcaccctggccgccttcaaggccggcaagctgcgcgttctg
gtcgccaccgacatcgccgcccgcggcatcgacgtcgacggcgtctcgcacgtcctgaac
ttcgagctgccctatgtgccggaagcctatgtgcaccgcatcggccgtacggcccgcgcc
ggcgccgatggcacggctatcagcttcgtggccggcgacgagatgaagctgctgcgcgac
atcgaaaaggtcacgcgccagaagatcccctcgaccgaccgccgcaacgacaagtcgctg
gccctgctggaccagtcgatcatggcctcgggcgtcaagtccaaggcttccatgcccgac
gacggccgcggcgaccgccagcagcagcgcggcccgcgcaatccgcgccgcgacggcgtc
aagctggaaggcggcggacaaccgcaccgcgtccgcaaggccggcccgggccgcgacgcc
cgtccgatccccgagcgtgccttcgacccgctggcccgcgagcgtccgcgctcgaccaac
aatgacccgcgccacaccagcgccccggccacagcctcggccaagcccgacggcgagatc
aagcgccgcccgcgccgccggaagccgtcgaatggcggcaaggggtatgcgacccagggc
tga
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