Aquidulcibacter paucihalophilus: KB221_06485
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Entry
KB221_06485 CDS
T09139
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
apah
Aquidulcibacter paucihalophilus
Pathway
apah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KB221_06485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apah03019
]
KB221_06485
03009 Ribosome biogenesis [BR:
apah03009
]
KB221_06485
Enzymes [BR:
apah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KB221_06485
Messenger RNA biogenesis [BR:
apah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KB221_06485
Ribosome biogenesis [BR:
apah03009
]
Prokaryotic type
rRNA helicases
KB221_06485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WIY70665
LinkDB
All DBs
Position
complement(1315748..1317955)
Genome browser
AA seq
735 aa
AA seq
DB search
MPFPASHPALDRALSERGYAEPTPVQSAVLEAEPGRDLLVSAQTGSGKTVAFGLALAPTL
LGEAEKFAEFGAPVALVIAPTRELALQVSNELQWLYAKTGARIVSCVGGMDPKVERQALN
RGCHIVVGTPGRLRDHLERGSLDLTTLQAVVLDEADEMLDMGFHEDLTFILETAPAERRT
LMFSATLARDIVQLAKTYQKDALRIDTVAGNASHADIEYKAIRVAPNEVELAVVNVLRYF
EAPGALVFANTRERVKHLTSSLRERGFSVVGLSGELTQSQRSEALQALRDGHARVCVATD
VAARGLDLPDLGLVIHAEIPVNKAGLLHRSGRTGRAGKKGVSVLLVSYTRRRKVELMLQS
ASIKAEWSGPPSAEMILANDQARMLADPVLIAPVEDEAVLALGKQLLEKSSPEQIAAALI
RLYQQKLPAPEDVYDDDRMKRQQETGKNDKGQPDVPYTDFARGGDMVWYRINIGRDKNAD
PKWLMPTICRLGHVTKRDIGSIKIFERETKFEITQEMQAKFEAAVALGLEDGVKIDPAVK
PGPSEKPVSRWDKKPAGDRPSGDRPERKPWKAREEGGDKPAWKPREDRPEGAKKPWVKRE
DSAPAAEGKKPWVKREETGEKPAWKAREDRPQGEKKPWVKRDDAPAPAAEGKKPWVKRTP
TDPTPDGKKPWVKKPPVEGKTPWTPRSDAETAPAAAAGDRPWKGKPKGGDRPWAAKDARG
KPAGAKPPYKAKGPR
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgcccttccccgccagtcatcccgcgctcgaccgcgccctttccgaacgcggctatgcc
gagcccacgccggtacaatccgccgtgctggaggccgaaccgggccgcgatctgctggtc
tctgcccagaccggttcgggcaagaccgtcgccttcggtctggccctcgcccccaccctg
ctgggtgaggccgagaaattcgccgagttcggcgcgcctgtggccctggtcatcgccccg
acccgcgaactggccctgcaggtctcgaacgagctgcaatggctctacgccaagaccggt
gcccggatcgtctcctgcgtcggcggcatggaccccaaggtcgagcgccaggcgctgaac
cgcggctgtcacatcgtggtcggcacgcccggccgtctgcgcgaccacctcgagcgcggc
tcgctcgacctgacgaccctgcaggccgtcgtgctcgatgaagccgacgaaatgctcgac
atgggcttccacgaggacctgaccttcatcctcgaaacggccccggccgagcgccgcacg
ctgatgttctcggccaccctggcgcgcgacatcgtgcagctggccaagacctatcagaag
gacgcgctgcggatcgacacggtcgcgggcaacgcctcgcacgccgacatcgaatacaag
gccatccgcgtcgccccgaacgaggtcgaactggccgtcgtcaacgtgcttcgctatttc
gaggcccccggcgcgctggtgttcgccaatacgcgcgagcgggtgaaacacctgacctcg
tccctgcgcgagcgtggcttctccgtcgtcggcctgtccggcgaactgacccagagccag
cgttcggaggccctgcaggccctgcgcgacggccacgcccgcgtctgcgtcgccaccgac
gtcgccgcgcgcggcctcgacctgcccgatctggggctggtcatccacgctgagatcccg
gtcaacaaggccggcctgctgcaccgctcgggccgtacgggccgcgccggcaagaagggc
gtctccgtcctgctggtcagctacacgcgccgccgcaaggtcgagctgatgctgcaatcg
gcctcgatcaaggccgaatggagcggcccgccctcggccgagatgatcctcgccaacgac
caggcccgcatgctggccgacccggttctgatcgcgccggtcgaggacgaagccgtcctg
gccctcggcaaacagcttctcgagaagagctcgccggaacagatcgcggccgccctgatc
cgcctctaccagcagaaactgcccgccccggaagacgtctacgacgacgaccggatgaag
cgtcagcaggagaccggcaagaacgacaagggccagccggatgttccgtacacggacttt
gcccgcggcggcgacatggtctggtaccggatcaacatcggccgcgacaagaacgccgac
ccgaaatggctgatgccgaccatctgccggctgggccatgtcacgaagcgcgacatcggc
tcgatcaagatcttcgagcgcgagaccaagttcgagatcacccaggagatgcaggcaaag
ttcgaggccgccgtggccctcggcctcgaggacggcgtcaagatcgatccggcggtcaag
cccggcccgtccgagaagcccgtcagccgctgggacaagaagcccgccggcgaccgcccc
tcgggcgaccgtccggagcgcaagccctggaaggcccgcgaggaaggcggcgacaagccg
gcctggaagccgcgcgaggaccggcccgaaggcgcgaagaagccgtgggtcaagcgtgag
gactccgcccccgccgccgagggcaagaagccctgggtcaagcgcgaggagaccggcgaa
aagcctgcgtggaaggcccgcgaggaccgtccgcagggtgagaagaagccgtgggtgaag
cgggacgacgcccctgccccggccgccgaaggcaagaagccctgggtcaagcgcacgccg
accgatccgacgccggacggcaagaagccgtgggtgaagaagccgccggttgagggcaag
acgccctggacgccgcgctccgacgccgagaccgcccctgccgccgccgccggcgatcgc
ccctggaagggcaagcccaagggcggcgatcgtccgtgggccgcaaaggacgcgcgcggc
aagccggccggagccaagccgccgtacaaggccaaggggccgcgctga
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