Malaciobacter pacificus: APAC_0277
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Entry
APAC_0277 CDS
T06712
Name
(GenBank) UvrD/REP family helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
apai
Malaciobacter pacificus
Pathway
apai03420
Nucleotide excision repair
apai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
apai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
APAC_0277
03430 Mismatch repair
APAC_0277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apai03400
]
APAC_0277
Enzymes [BR:
apai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
APAC_0277
DNA repair and recombination proteins [BR:
apai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
APAC_0277
MMR (mismatch excision repair)
Other MMR factors
APAC_0277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
CarD_TRCF_RID
HHH_5
AAA_11
Uma2
DUF4252
Motif
Other DBs
NCBI-ProteinID:
QEP33439
UniProt:
A0A5C2H4V8
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All DBs
Position
265286..267340
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AA seq
684 aa
AA seq
DB search
MSENLLSSLNEAQKVAAEYIDGSLLILAGAGSGKTKTITTRLAYLISIGIDPSSILTLTF
TNKAASEMRERAFKMIDSTIINTPPLLCTFHKFGLLFLKFHMSELNRKNNFVIIDTDDKK
RILKSIDKEITTSLLVSEISKYKNTLITPYEAKSSAQLKLYQQIANIYEKYEEYLLKNNL
VDFDDLLLLPYKILKENESLAKEISQKYQYIMVDEYQDTNELQYRLLRLLCSSHNNLCVV
GDDDQSIYGWRGATIKNILNFSEHFENTKVVKLEENYRSTDTILDHANQLIEHNRDRLGK
KLVGTKDKGSSVRVYESHDENEETRKICDDIKILLESGVQGKDIAILFRVNALSRSLEEG
FNRAGLHYKLVGGMKFYERAEIKDLIAYFRVLTNSNDNFSVKRIINKPKRGIGKTTIEKL
DAKSIETQKSIVDLISSLSSEELSAVVGKKNARTLKVFEASIMDLREILNDSKMKFLDSF
EETFDYRASYDNVPDGFDRQGNIDEFYGYVRDFFIQNPHLDLKDFLNEIALESESDEFSG
EAVSMMSIHAAKGLEFKHLFIIGFEEGFFPITGDGSDIEEERRLGYVAITRAMDKLTLSF
AHSRFYKGKRTILTKSRFLSESGVIKGSLTIEKHSSFKKGDLVQHKIFGIGRVQKSTKAG
KDYKLTINFGGTHREILSSFVEKA
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaatctattatcatctttaaacgaagcacaaaaagtcgctgcagagtatatt
gacggttcactattgattcttgcaggagcagggtcaggtaaaactaaaactattacaact
agacttgcttatttaatatcaattggaatcgatccaagttcaattttaacattaacattt
acaaataaagctgcaagtgaaatgagagaaagagcatttaaaatgatagattcaactatt
ataaatactcctccattactttgtacttttcataagtttggtttactttttctgaagttt
cacatgagtgaattaaatagaaaaaataattttgtgataatagatactgatgataaaaaa
agaatattaaaatctattgataaagagattactacatcacttttagttagtgaaatatca
aaatataaaaatactttgattactccatatgaagcaaaatcaagtgctcaattaaaatta
tatcaacagattgcaaatatatatgaaaaatatgaagaatatcttttaaaaaacaacttg
gttgactttgatgatttattacttcttccatataaaattttaaaagagaacgaatcttta
gcaaaagagataagtcaaaaatatcaatatataatggttgatgagtatcaagatacgaat
gaattacaatatagattactaagattattatgctcatcacataataatctatgtgtcgta
ggtgatgatgatcaatcaatatatggttggagaggtgctacaattaagaatatacttaat
ttctctgagcacttcgaaaatacaaaagttgtaaaacttgaagaaaactatagatcgact
gatacaattttagaccatgcaaatcaattgattgaacataatagagacagattaggtaaa
aaattagttggtactaaagataagggtagttctgtaagagtttatgagtcccatgatgaa
aatgaagagacaagaaaaatttgtgatgatattaaaattttattagaatcaggtgttcag
ggaaaagatattgcaattttatttagagtaaatgctttatcaagatcactagaagaagga
tttaatagagcaggacttcattataaattagtaggtgggatgaaattctatgaaagagct
gagataaaagacttaattgcatattttagagttcttactaattcaaatgataatttttca
gtaaaaagaattattaataaacctaaaagaggcattggtaaaacaacaatagaaaagctt
gatgctaaatcaatagagacacaaaaatcaattgtagatttaatttctagtttaagttca
gaagaactatcagcagttgttggtaagaaaaatgcaagaactttaaaagtatttgaagct
tctataatggatttaagagaaatattaaatgattcgaaaatgaaatttttagattcattt
gaagaaacttttgattatagagcttcttatgataatgtgccagatggttttgatagacaa
ggaaatattgacgaattttatggatatgtaagagatttctttattcaaaatccacattta
gatttaaaagactttttaaatgaaattgctttagagagtgaaagtgatgaatttagtggt
gaagcagtttcaatgatgagtattcatgctgcaaaaggtttagagtttaaacatctattt
ataattggttttgaagaaggttttttcccaataactggtgatggtagtgatatagaagag
gaaagaagattagggtatgttgctataacacgtgcaatggataaactaactctttcattt
gctcattcaagattttacaaaggtaaaagaacaatcttgacaaaatcaagatttttaagt
gaatcaggtgtgattaaaggaagtttaacaattgaaaaacactcatcatttaaaaaaggt
gatttagttcaacataaaatatttggtataggaagagttcaaaaatctacaaaagctgga
aaagattataaattaacaatcaattttggtggaactcatagagaaattttatcttcattt
gtggaaaaagcttag
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