Malaciobacter pacificus: APAC_1215
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Entry
APAC_1215 CDS
T06712
Name
(GenBank) murein L,D-transpeptidase, YcbB/YkuD family
KO
K21470
L,D-transpeptidase YcbB
Organism
apai
Malaciobacter pacificus
Brite
KEGG Orthology (KO) [BR:
apai00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
apai01002
]
APAC_1215
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
apai01011
]
APAC_1215
Peptidases and inhibitors [BR:
apai01002
]
Cysteine peptidases
Family C82
APAC_1215
Peptidoglycan biosynthesis and degradation proteins [BR:
apai01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
APAC_1215
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
QEP34334
UniProt:
A0A5C2HC09
LinkDB
All DBs
Position
complement(1214797..1216713)
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AA seq
638 aa
AA seq
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MSKNKFIFSICLLTATNLFANLENNTTNETIINTVPTTSTNNLEIKEIEPTFEELISIDL
KNELKLKQKLLFTTNKYLRTYYKQNNYLPFWFDEKGIKEISLTLLDSIKNDPVIEPHATK
AFKLEKILDALSNIDKSPENYNKSMIQIDFMLTEIYDRYMRYLSKGTINWKKFQRRLNEL
KRKDILADWEKFNVKTDSKKLLIEAINKNDLNIAFSQVNFTYPNSDKLISEIDKLEEILE
NGDYVKTPNFKKSLRVGDKSETIKVLRKRLIQSNDLTSNCVQTIVADEIITNNIQTNETS
SQIAQKEKLVSNELKQIDCETIFDEELKEAVISFQKNHGLTPDGVVGPNTRKFLNISAKN
KIDQIRLNLERMRWLPRDLGEKFLLVNIPDYKLKMYDNGEVKLDMNVVVGEKKHPTPIFS
NEMSYIVLNPYWKIPRRIAQKELIPKLVDNPNYVNEKGIRIHEGWDPNTLPLDANSINWQ
EYHAYLENKEAIKKDKNVEPIEVSEETLALPALRFIQTPSNNNPLGRMKFMFPNKYSVYM
HDTNAKSLFRRTTRAFSHGCIRLAEPKELLKTISKYDSNINITKADEVLQESEKKDIGLK
KRIPVHIVYLTSWVDENGKLQFRDDIYKYDRMQKDLIF
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaataaatttattttttcaatttgcttactaactgcaactaatctattcgca
aatttagaaaataatactactaatgaaactataattaatactgtaccaactactagcaca
aataatttagagataaaagagatagaaccaacatttgaagaattaataagtattgattta
aaaaatgaattaaaattgaagcaaaaacttctttttacaacaaataaatacttaagaaca
tactacaaacaaaataattatttaccattttggtttgatgaaaaaggtataaaagagata
tctttaactcttttagatagtattaaaaatgatcccgtaatcgaaccccatgctacaaaa
gcatttaaacttgaaaaaatattagatgctctttcaaatattgataaatctcctgaaaac
tataataagtcaatgattcaaattgattttatgctaacagaaatttatgatagatatatg
agatatttatcaaaaggtactataaattggaagaagtttcaaagaagattaaatgaacta
aagagaaaagatattttagcagattgggaaaaatttaacgtaaaaactgatagtaaaaaa
ctacttattgaagctattaataaaaatgatttaaatatcgctttttcccaagtaaatttc
acatatccaaactcagataaattaattagtgaaattgataaactagaagaaatcttagaa
aatggtgattatgtaaaaactccaaatttcaaaaaaagtttaagagtcggtgataaatca
gaaacaattaaagttcttagaaaaagattaattcaaagtaatgatttaactagtaactgt
gtacaaactatagtagctgatgaaattattacaaataatattcaaactaatgaaacatct
tctcaaatagctcaaaaagaaaaattagtttcaaatgaattaaaacaaattgactgtgaa
acaatatttgatgaagagttaaaagaagctgtaatatctttccaaaaaaaccatggatta
acacctgatggtgtagttggaccaaatacaagaaaatttttaaatatttctgcaaaaaat
aaaattgaccaaatcagattaaatttagaaagaatgagatggctacctagagatttaggt
gaaaaatttctactagttaatattcctgattataaactaaaaatgtatgacaatggagaa
gttaaattagatatgaatgttgtagtaggagagaaaaaacaccctactccaattttttca
aatgagatgtcatatattgttttaaatccttattggaaaataccaagaagaattgcacaa
aaagaattaatcccaaaattagttgataatcccaactatgtaaatgaaaaaggtatccga
attcatgaggggtgggaccctaataccttaccacttgatgcaaattcaattaattggcaa
gagtatcatgcttatttagaaaacaaagaagcaattaaaaaagataaaaatgttgaacca
attgaagtaagtgaagagactttagcacttcctgctttaagattcattcaaactccaagt
aataataatccacttggtagaatgaaatttatgttcccaaataaatattcagtatatatg
catgatacaaatgcaaaatctttatttagaagaacaactagagcattttcacatggatgt
attaggctagctgaaccaaaagagttactcaaaactatttcaaaatatgattcaaatata
aatatcaccaaagcagatgaagttttacaagagagtgaaaaaaaagatattggattaaaa
aaaagaattcctgtacatattgtgtacttaacatcatgggttgatgaaaatgggaaactt
caatttagagatgatatatataaatatgacagaatgcaaaaagatttaattttttaa
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