Malaciobacter pacificus: APAC_1334
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Entry
APAC_1334 CDS
T06712
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
apai
Malaciobacter pacificus
Pathway
apai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APAC_1334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apai03019
]
APAC_1334
Enzymes [BR:
apai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
APAC_1334
Messenger RNA biogenesis [BR:
apai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
APAC_1334
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QEP34450
UniProt:
A0A5C2H668
LinkDB
All DBs
Position
complement(1334988..1336154)
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AA seq
388 aa
AA seq
DB search
MKGKDLLGTAQSGSGKTAAFLLPILNNLAQTRIEVPVLRALIIAPTRELAKQISQAVDDL
GKYLDIKNTTIFGGVSLKDQEKKIANGLDIVVATTGRLMEHLRNNTIDLSSITHVVIDEV
DTILAMGFLEDLEAILPNVGPNRQIMMFSATLNQNVKKLAKEFLNDPAVVEVVNQRSSVD
IIEQRVIEVDPNQKAPLLSYLIGSQNYPQVLVFVNTKKIADALVRHFELDGLPSACIHGD
VRQSARAKALRKFKEGEIRVLVATDIAARGIDIEMLPVVVNFELPETIADYTHRIGRTGR
AGNPGTAITLLSVKDYRMMMDIEKELILDLGRQTVEDFEPTEKKPRLVKPKPKKLSEKKA
GNREKVAKRGPKKSKKTTKRDEGRSFRR
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtaaagacctgctaggaactgcacaaagtggttctggtaaaacagcagctttt
ttattaccaatattaaataatttagcacaaacaagaattgaagttccagttttaagagct
ttaattatagctccaacaagagaattagcaaaacaaatatctcaagcagttgatgattta
ggaaaatatttagatattaaaaatactactatttttggtggtgtatcattaaaagatcaa
gaaaagaaaattgcaaacggtcttgatatagttgtagcaacaacaggcagactaatggaa
catcttagaaataatactattgatttatcaagtattactcatgttgtaattgatgaagtt
gatacaattttagctatgggatttttagaagatttagaagcaattttgccaaatgttggg
ccaaatagacaaatcatgatgttttcagcaactctaaatcaaaatgttaaaaaactagca
aaagagtttttaaatgaccctgctgttgttgaagtagtaaatcaaagaagtagtgttgat
attattgagcaaagggttattgaagtagatccaaatcaaaaagctcccctgctttcatat
ctaattggttctcaaaactatccacaagttttagtatttgtaaatactaaaaaaatagca
gatgccttagtgcgacactttgagcttgatggtcttccaagtgcttgtattcatggagat
gtaagacaatcagctcgtgctaaagctttaagaaagttcaaagaaggagaaatcagagta
ttagttgctactgatattgcagcacgtggaattgatatagaaatgcttcctgttgtagta
aactttgaattaccagaaacaattgctgattatacacatagaattggaagaacaggaaga
gctggaaatcctggaactgcaattacactattaagtgtaaaagattatagaatgatgatg
gatattgaaaaagagttgattttagatttaggtagacaaactgttgaagattttgaacca
acagaaaaaaaaccaagacttgtaaaaccaaaacctaaaaaacttagtgaaaaaaaagct
gggaatagagaaaaagtagctaaaagaggtccaaaaaaatcaaaaaaaacaacaaaaaga
gatgaaggtagaagttttagaagataa
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