KEGG   Malaciobacter pacificus: APAC_2134
Entry
APAC_2134         CDS       T06712                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
apai  Malaciobacter pacificus
Pathway
apai03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:apai00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    APAC_2134 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:apai03021]
    APAC_2134 (rpoC)
   03400 DNA repair and recombination proteins [BR:apai03400]
    APAC_2134 (rpoC)
Enzymes [BR:apai01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     APAC_2134 (rpoC)
Transcription machinery [BR:apai03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     APAC_2134 (rpoC)
DNA repair and recombination proteins [BR:apai03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      APAC_2134 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 RPOC_hybrid
Other DBs
NCBI-ProteinID: QEP35205
UniProt: A0A5C2HCC2
LinkDB
Position
complement(2120752..2125281)
AA seq 1509 aa
MSNNEKILSPIEIKELERPQDFAAFQLRLASPEKILSWSCGEVKKPETINYRTLKPERDG
LFCAKIFGPVKDYECLCGKYKKMRYKGVVCEKCGVEVTSSKVRRHRMGHIDLVSPVAHIW
MVSSLPTRIGTLLGVKLKDLERVLYYEAYIVSEPGEAFYDNEKTKKVEKFDILNEEQYRT
ISDLFEHTGFSANMGGDVVRELLETLDLFELLTVLKEEMAGTKSEAKRKTIVKRLKVVEN
FINSGNRPEWMMLTQLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNNRLKRLTELD
APEIIIRNEKRMLQEAVDALFDNGKTANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKR
VDFSGRSVIVVGPTLNMDQCGIPKKMALELFKPHLMAKLEEKGYATTLKSAKRLIESQTN
EVWECLNEIVDEYPVLLNRAPTLHKLSIQAFHPVLIDGKAIRLHPLVCAAFNADFDGDQM
AVHVPLSQEAVAEAKILMMSSMNILLPASGRAIAVPSQDMILGIYYLSLEKDGVQGEHKL
FTDVNEVKIALESGKIDLHAKIRSKVDNKVIHTTVGRLIIKEILPPFVPVELWNKILKKK
DIGTLVDYIYKHGGYEVTPKFLDNLKNLGFKYATQAGISISIDDIRVPDSKEGHIAKSKK
EVIEVQKQFGQGLLTEQERYNKIIDIWTEVNNKLGTEMMQLVESDKGGFNSIYMMADSGA
RGSSAQIRQLSGMRGLMAKPDGTIIETPIISNFREGLNVLEYFISTHGARKGLADTALKT
ANAGYLTRKLIDVSQNVRITNEDCGTHEGVEITDISSGNELIESLEERITGRVIAEDIID
PISNEILFTEGSLISEEDAKVVADAEVKAVTIRTPLTCKEEHGLCAKCYGLNLGEQRKVT
PGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASATQTERELRADKEGFIRYYNIKTYIDRN
GKAIVANRRNAGILLVEPKINAPFKGKVTVETIHEETILTITNGTDTKKYYLRKNDVARA
NELAGVSGKIEGKLYLPYTDGVEVEQNESIVEMIKDGWNVPNRIPFASVLRVEDGAPITS
EIVSGAKGVVKYYKLHGDYLERREDFKAGDVVNDKGVFAVVVDAEDREALRHYIARGSVV
EFDDNSEIENNSVLAKPASGEQVVIAEWDPYSNPTIAEKAGTITFEDVVPGVTVSEQFDE
LTGTSKLVVNEYIPSGYKPTVILATEAKELIRYSLEPKTSINVSEGQKVEIADIIGKTPK
ATQKSKDITGGLPRVSELFEARRPKSIAVLASFDGMVSFGKPLRNKQRLIVTDENGVKAE
YLVEKSKQILVHEGEFVHAGEALTDGQVSPHDVLKILGEKALHYFIVSEVQQVYRSQGVN
IADKHIEVITSQMLRQVSIIDGGDTKFIIGDMVSKKRFKIENERIIKLGGQPAIAEPLLL
GITRAAVTSDSIISAASFQETTKVLTEAAISAKMDMLEDLKENVVIGRTIPVGTGLYKDK
KVKFADYEQ
NT seq 4530 nt   +upstreamnt  +downstreamnt
atgagcaataatgaaaaaattttatcaccaatagaaattaaagagttagaaagaccgcaa
gattttgctgctttccaattaagattagcaagtccagaaaaaatactttcatggtcttgt
ggtgaagttaaaaaaccagaaactattaactatagaacattaaaacctgaaagagatggt
ttattttgtgctaaaatttttggaccagtaaaagattacgaatgtctttgtggtaaatac
aaaaagatgagatacaaaggtgttgtatgtgaaaaatgtggtgttgaagtaacttcttct
aaagttagaagacacagaatgggtcacattgacttagtatctccagttgctcacatttgg
atggtatcttcattacctacaagaattggtacattactaggtgttaaattaaaagattta
gaaagagtattatattacgaagcatatattgtatcagaaccaggtgaagctttttatgat
aatgaaaaaactaaaaaagttgaaaaatttgatattttaaatgaagaacaatatagaact
atttctgatttatttgaacacactggattttctgcaaatatgggtggagatgtagttaga
gaactactagaaactttagacttatttgaattattaactgttcttaaagaagaaatggct
gggactaaatctgaagcaaaaagaaaaactattgttaaaagattaaaagttgtagagaac
tttattaactctggaaatagaccagaatggatgatgttaacacaacttccagttcttcct
ccagatttaagaccacttgtatcattagatggtggtaagtttgcagtttctgatgttaat
gacctttatagaagagttattaacagaaataatagactaaaaagacttactgaacttgat
gcacctgaaattattattagaaatgaaaaaagaatgcttcaagaggcagttgatgcttta
tttgataacggtaaaacagcaaatgcagttaaaggtgcaaataaaagacctttaaaatct
ttatctgaaatcattaaaggtaagcaaggtagatttagacagaacttacttggtaaaagg
gttgacttctcaggaagatctgttattgttgttggacctacattaaatatggatcaatgt
ggtattcctaagaaaatggctttagagttatttaaaccacacttaatggctaagttagaa
gaaaaaggttatgcaacaactttaaaatctgcaaagagattaattgaatcacaaacaaat
gaagtttgggaatgtttaaatgagattgttgatgagtatcctgtattactaaatagagct
ccaactcttcacaaactttctattcaagctttccacccagtactaattgatggaaaagct
attagattacacccattagtttgtgctgcatttaatgccgacttcgatggtgaccaaatg
gcggtacacgtgccattatcacaagaggctgttgctgaagctaagattttaatgatgtca
tctatgaatattcttttacctgcttctggtagagctattgctgtaccatcacaggatatg
attttaggtatttactacttatcattagaaaaagatggtgttcaaggtgaacataaacta
tttacagatgtaaatgaggtaaaaattgcattagagtctggaaaaattgacttacatgca
aaaattagatctaaagtagataataaagtaattcatacaactgttggtagattaattatt
aaagagattttacctccatttgttccagttgaattatggaataaaattttaaagaaaaaa
gatattggtacattagttgactatatctataagcatggtggttatgaagtaactcctaaa
ttcttagataacttaaagaacttaggtttcaaatatgctacacaagctggtatttcaatc
tctattgatgatattagagttcctgattcaaaagaagggcacattgctaaatctaaaaaa
gaagttattgaagttcaaaaacaatttggtcaaggtttattaactgagcaagaaagatac
aataaaattattgatatctggacagaagttaataataaacttggaacagagatgatgcaa
cttgttgagtctgataaaggtggatttaactctatatatatgatggctgactcaggggct
agaggttcttctgctcagattagacagttatcaggtatgaggggtcttatggctaagcct
gatggtactattattgaaacaccaattatctcgaactttagagaaggtctaaatgtactt
gagtactttatttctactcacggtgcgagaaaaggacttgccgatacagcacttaagaca
gcaaatgctggttacttaacaagaaagcttattgatgtttctcaaaatgttagaattact
aatgaagattgtggaactcatgaaggtgttgaaattacagatatctcttctggtaatgaa
ctaattgagtcattagaagaaagaatcactggtagagttattgctgaagatattattgat
ccaatttcaaatgaaattttatttactgaaggttcattaatttctgaagaagatgcaaaa
gttgttgctgatgctgaagtaaaagctgttactattagaacaccattaacttgtaaagaa
gagcatggtttatgtgctaaatgttatggtcttaaccttggtgagcaaagaaaagtaact
cctggtgaagctgttggggttgttgctgcgcaatctattggtgagccaggtactcagctt
acacttagaacattccacgttgggggaactgcaagtgcaactcaaactgagagagaatta
agagctgataaagaaggtttcattagatactacaatattaaaacatatattgatagaaat
ggaaaagctattgtagcaaacagaagaaatgctggtattttattagttgaaccaaaaatt
aatgcaccatttaaaggtaaagtaactgttgaaactattcacgaagagactattttaaca
attactaatggtactgatactaaaaaatattacttaagaaagaatgacgttgcaagagct
aatgagcttgctggtgtttctggaaaaattgaaggtaaattatacttaccatacactgat
ggtgttgaagttgaacaaaatgagtctatcgttgagatgattaaagatggatggaatgtt
cctaacagaattccttttgcatctgtattaagagttgaagatggtgctccaattacttct
gagattgtttcaggagctaagggtgttgttaaatactacaaattacatggtgattattta
gaaagaagagaagacttcaaagctggtgatgttgtaaatgacaaaggtgtatttgctgtt
gttgttgatgctgaagatagagaagcattaagacactatattgcaagaggttctgttgta
gaatttgatgataattctgaaattgaaaataattcagtattagcaaaaccagcatctggt
gagcaagttgttattgctgagtgggatccatattcaaacccaacaattgcagaaaaagca
ggaacaattacatttgaagatgtagttccaggtgttactgtttctgagcaatttgatgaa
ttaacaggaacttctaaattggttgttaatgaatatatcccaagtggatataaaccaaca
gttatattagcaactgaagcaaaagagttaattagatattcattagagcctaaaacatct
attaatgtttctgaaggtcaaaaagtagagattgcagatattattggtaaaacaccaaaa
gctactcaaaaatctaaagatattactggaggtcttccaagagtatctgagttatttgaa
gctagaagaccaaaatcaattgctgttttagcatcatttgatggtatggtttcatttggt
aaaccactaagaaataaacaaagattaattgttactgatgaaaatggtgttaaagctgag
tatttagtagaaaaatctaaacaaattttagtacatgaaggtgagtttgttcacgctggt
gaagcattaacagatggtcaagtttctcctcatgatgtattaaaaattcttggtgaaaaa
gcacttcattacttcattgtttctgaagtacaacaagtatatagatctcaaggggttaat
attgccgataaacatattgaggttattacatctcaaatgttaagacaagtatctattatt
gatggtggagatactaagtttatcattggtgatatggtttctaagaaaagatttaaaatt
gagaatgaaagaattattaaacttggtggacaacctgcaattgctgagccattattactt
ggtattacaagagcagctgttacatcagattctattatctctgctgcatctttccaagag
actacaaaagtattaacagaagctgcaattagtgcaaaaatggatatgcttgaagactta
aaagaaaacgttgttattggtagaactattcctgttggaactggtctatacaaagacaaa
aaagttaaatttgctgattatgagcaataa

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