Malaciobacter pacificus: APAC_2282
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Entry
APAC_2282 CDS
T06712
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
apai
Malaciobacter pacificus
Pathway
apai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APAC_2282 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apai03019
]
APAC_2282 (rnr)
03016 Transfer RNA biogenesis [BR:
apai03016
]
APAC_2282 (rnr)
Enzymes [BR:
apai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
APAC_2282 (rnr)
Messenger RNA biogenesis [BR:
apai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
APAC_2282 (rnr)
Transfer RNA biogenesis [BR:
apai03016
]
Prokaryotic type
tRNA degradation factors
APAC_2282 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
Motif
Other DBs
NCBI-ProteinID:
QEP35343
UniProt:
A0A5C2H942
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All DBs
Position
complement(2279546..2281393)
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AA seq
615 aa
AA seq
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MLKELFTKLQSQNQNFNEEELKLIKKYEDQGIIQKNEDTYELNSKYKVAIVNVGKNLVIL
EDLVSEHKNIKIEFDSLNGAYNGDLVLAKRVFNPRSRTKAKIIKVLDGKSHDILVYVKDG
NFHTLKENILLQSKKSKDYKEGDVLLIDNKSFDLVKNIGNLSDAKIDEFISLYLYQETFR
HDKPLEVNAKMDDIKKRVDLRELPFCTIDPNSAKDHDDAIYYDQNEKVLYVAIADVSYFV
KEGSELDKLAFKKSTSIYLPAKVLPMLPNELSEDMCSLKEGVDRYAYVFKIYLDLEKQDV
IKSELFEAIINSHKKYSYGRIDRVIEGHFDQTSAIDNEIFKYLLPLYEVTKAYRAKRLKT
GYEFRTQENRLRLKNFKVESIEVETSTASHQLIEECMLLANIEASKKVNSVGIYRIHEEP
SLKAISKLVDDVNILGVSVKLKNNVHETITHIQQKAKYTGLEEEIDELIIQSQTQAKYSS
KNLGHFGLGFKSYSHFTSPIRRYSDLVLHRILKTKQTPKDIDAICEHISTNERKVDQLVW
DFEDRKYARWAKDNIGNYIKVKVVDTEKGRAVCVENMIGLKLTLDNYKAQKLFSKMKVKI
KSADIATKQIVATIV
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
ttgctaaaagagctatttactaaacttcaatcacagaatcaaaactttaatgaagaagaa
ttaaaattaattaaaaaatatgaagatcagggaatcattcaaaaaaatgaagatacctat
gaattaaattcaaaatataaagttgccatagttaatgtaggtaaaaacttagtaatttta
gaagatttagtaagtgagcacaaaaatattaagattgagtttgatagtttaaatggggct
tataatggtgatctagtactagcaaaaagagtttttaatccaagaagcagaactaaagca
aagattataaaagttttagatggaaagagtcatgatattttagtttatgtaaaagatggg
aattttcatactttaaaagagaatattttacttcaatcaaaaaaatcaaaagattataaa
gagggcgatgttttactaattgataataagtcatttgatttggttaaaaatattggaaat
ttaagtgatgctaaaattgatgaatttatttcactatatttatatcaagagacttttaga
catgacaagcctttagaagtaaatgcaaaaatggatgatattaaaaaaagagttgattta
agagagcttcctttttgtactattgatccaaatagtgcaaaagaccacgatgatgcaatt
tattatgatcaaaatgaaaaagtattgtatgtagcaattgcagatgtttcttattttgta
aaagagggcagtgagttagataaattagcttttaaaaaatcaacttctatttatttacct
gcaaaagttttacctatgcttccaaatgaactaagtgaagatatgtgttcattaaaagaa
ggagttgatagatatgcttatgtttttaaaatatatttagatttagaaaaacaagatgta
attaaaagtgaactttttgaagcaattataaactctcacaagaaatactcttatggaaga
attgatagagttattgaaggccattttgaccaaacaagtgcaattgataatgagatattt
aaatacttacttccactttatgaagttacaaaagcatatagagctaaaagattaaaaaca
ggatatgagtttagaactcaagaaaacagattaagacttaaaaattttaaagttgaatca
attgaagttgaaacttcaactgcatctcatcaattaattgaagagtgtatgttgttagca
aatatagaagcaagtaaaaaagttaatagtgtaggaatttatagaattcatgaagagcca
tcattaaaagctatttcaaaattggttgatgatgtaaatatattaggtgttagtgtaaaa
ctaaaaaataatgttcatgaaacaattactcatatacaacaaaaagcaaaatatactgga
cttgaagaagagattgatgaacttattattcaatctcaaactcaagcaaaatatagttct
aaaaacttaggacactttggtttaggatttaaatcttattctcattttacaagtccaatt
agaagatattcagatttagtgttacatagaattttaaaaacaaaacagactccaaaagat
atagatgccatttgtgaacatatctctacaaatgaaagaaaagtagaccaacttgtttgg
gattttgaagatagaaaatatgcaagatgggcaaaagataatattggaaactatattaaa
gtaaaagttgttgatacagaaaaaggaagagctgtttgtgtcgaaaatatgattggatta
aaattgactttagataactataaagctcaaaagctattttctaaaatgaaagtaaaaata
aaatctgcagatattgcaacaaaacaaattgtggcaactatagtgtag
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