Aeribacillus pallidus: AP3564_05180
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Entry
AP3564_05180 CDS
T04993
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
apak
Aeribacillus pallidus
Pathway
apak03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AP3564_05180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apak03400
]
AP3564_05180
Enzymes [BR:
apak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AP3564_05180
DNA repair and recombination proteins [BR:
apak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AP3564_05180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
Hormone_1
Motif
Other DBs
NCBI-ProteinID:
ASS89723
UniProt:
A0A223E3C9
LinkDB
All DBs
Position
1090719..1094246
Genome browser
AA seq
1175 aa
AA seq
DB search
MESLYQFFYAQNDFQAVVDGIKEGLKEQMVAGLSGSARSVFISAFYKDVKQPMLVVTHNL
YQAQIIYEDLNNLLGDSVYLYPVNELIASEIAVASPELKSQRMEVLNRLCKGEKSIVVAP
VAALRRMLPPKELWKSHQLSISVGGTFELNEKLPHLHSMGYERVSMVSAPGEFSVRGGII
DIYPLTEEHPIRIELFDTEVDSIRTFSLEDQRSIEMIQEVTIGPAEEIILTDSHYEKGMK
QLETALSSSLKKLKKDEHKNLFIENIRYDLEKLQNRQKDQEFFKYFSFFYDKPASLLDYF
PADTVIVIDEVSRVHEMVDHLENEEGEWFTSLLEQGKIVHDAKVSHKYYQLIRDTSYPIV
YLSLFLRHVPYTNPQNLMNVSCKQMQNFHGQMHLLKSEVDRWIKANYTVVFLGANDERAK
RLERVLGDYEIEAVISDSNHILSKGLHILKGDLQTGFELPLGRLAVITEEELFKKRVKRR
QQRQKLSNAERIKSYSELEVGDYVVHVNHGIGKYLGIETLEINGIHKDYLHIRYQGNDKL
YVPVEQIDQVQKYVGTEGKEPKIYKLGGNEWKRVKKKVESSVQDIADDLIKLYAEREASK
GYAFSPDSEMQREFEATFPYKETEDQLRSIQEVKKDMERERPMDRLLCGDVGYGKTEVAI
RAAFKAIMDQKQVAFLVPTTILAQQHYETIRDRFQDYPISIGVLSRFRTRKEQNETIKGL
KNGTIDLVIGTHRLLSKDVQFKDLGLLIIDEEQRFGVTHKEKIKQMKANIDVLTLTATPI
PRTLHMSMIGVRDLSIIETPPENRFPVQTYVAEYNPMLVKEAIERELARGGQVYVLYNRV
EDIDRKANEISMLVPDARVTFAHGKMSENELESVILNFLDGQYDVLVSTTIIETGVDIPN
VNTLIVYDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLSEVAEKRLQAIKEFTEL
GSGFKIAMRDLAIRGAGNLLGPQQHGFIDSVGFDLYSQMLKEAIEQRKGEQPKETKREVE
IELELDAYIPQSYIDDGKQKIDMYKRFRGIETFDDLQELHEELLDRFGEYPKEVDFLFKV
AKLKLYARQEKVEVIKQTKDLITILISEEASSSFDGQKLFELTDEFGRIVGFGMEGKRLK
LTLQIHNLETEKWLSILMKLLAGLKDAKKEEVSAG
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttggaaagcctgtatcaatttttttatgcgcaaaacgactttcaagcagttgtagacggt
ataaaagaaggtttgaaagagcaaatggtagccggactttctggctcagcaaggtctgta
tttatttccgctttttacaaagatgtcaaacaaccgatgctggttgtgactcataacctt
tatcaagctcagatcatttatgaagatttaaataatttactaggcgattccgtctatttg
tatcctgtaaatgaattgatcgcatctgagatcgcagtcgcaagtccagagctaaaatca
caaaggatggaagtgttgaatcgtttatgtaaaggtgaaaaaagcatcgttgtagccccc
gttgctgcattaagacgaatgctcccaccgaaagagttatggaaaagccatcagctttct
atttctgttggaggaacatttgaattaaacgagaagcttccgcatcttcactcaatggga
tatgaacgtgtttccatggtgtctgctcctggggaattcagcgtgcgcggtggaattatt
gatatttatcctttaacggaggaacatcctattcgcatcgaactatttgatacggaagta
gattcaatccgaacgttcagtcttgaagaccaaagatcgattgaaatgattcaagaagtg
acaatcggaccggcagaggaaatcattttaacggacagccattatgaaaaaggaatgaag
cagttagaaacggctttatcaagcagcttaaagaaattgaaaaaagatgagcacaaaaat
ttatttatagaaaatatccgctatgatctggaaaaattgcaaaataggcagaaggatcag
gagttctttaaatatttttcattcttttatgacaaacctgctagtttgctagattatttc
cctgcggatacggttattgtcattgatgaagtaagccgtgtgcatgaaatggttgatcat
cttgagaatgaagaaggagaatggtttacttctttactggaacaagggaaaattgtccat
gatgcgaaagtgtcccataaatactaccagcttatacgtgacacatcttatccaattgtt
tatttatcactgtttttgcggcacgtcccctatacaaacccgcaaaatttgatgaacgtg
tcttgcaagcagatgcaaaatttccatggacaaatgcacttgttgaaatcagaagttgat
cgctggatcaaggcaaattacaccgtagtttttctcggtgcaaatgatgaacgggccaaa
agacttgaacgggtgcttggagactatgagattgaagcagtcatttctgattcaaaccac
attctgtcaaaggggctgcacattttaaaaggagatttacagacaggctttgaacttcct
ttaggacgacttgcggtcataacggaagaagaacttttcaaaaagagggtaaaacgaaga
cagcaaaggcagaagctttcaaatgcagaaagaattaaaagctattctgagcttgaagtg
ggagattatgtcgtacatgttaatcatgggattggaaaatatcttggaattgaaacttta
gaaattaacggtatacacaaagactacctgcacattcgttaccaaggaaatgacaaactg
tatgttccagttgaacaaattgatcaagttcaaaaatatgtgggcacagaaggaaaagag
ccgaaaatttacaaattaggcggaaacgaatggaaaagagtcaagaaaaaagtggaatcg
tctgttcaagatattgctgacgatttaattaaactgtatgctgagcgggaagcaagcaaa
ggctatgcgttcagccctgattcggagatgcaaagggagtttgaagcaacattcccttat
aaagaaacggaagatcagcttcgttccattcaagaggtgaaaaaggatatggaacgggag
cggccgatggatcgacttctttgcggagatgtcggatatgggaaaaccgaggtggcgatt
cgggctgccttcaaagcgattatggatcaaaaacaagttgcctttcttgttccgacaacc
attttagcgcagcagcattacgaaacgatcagggatcgttttcaagattacccaattagc
attggtgtattaagccgcttccggacgagaaaagagcagaatgaaacgattaaaggcttg
aaaaatggaacgatcgatttagtcattggaacacatcgtttgctttccaaagatgttcaa
tttaaagatttaggcttgttgattattgatgaggagcagcgatttggagttacacataaa
gaaaaaataaaacaaatgaaagcaaacattgatgtgttaactttaacggcaactccgatt
ccaagaacactccacatgtccatgatcggcgtgcgtgatctatcaatcattgaaactcct
ccagaaaatcgctttcctgttcaaacatatgtagcggaatataacccaatgcttgtgaaa
gaggcgatcgaacgtgaattagcgcgaggaggtcaagtatacgttttatataaccgggtt
gaggatatcgaccggaaagccaatgaaatctctatgcttgttccagatgcaagagtaacc
tttgcacatggaaaaatgtctgaaaatgagcttgaatcggtaatattaaactttttggat
ggccaatatgacgtgcttgtcagcacaactattattgaaacaggtgtggacattccgaat
gtaaatacattgattgtttatgacgccgataaaatggggctttctcagctctatcaattg
cgcgggcgtgtcggtcgttccaatcgtgtcgcttacgcatattttacttaccggaaggac
aaagttttatcagaagttgctgaaaaacgattgcaggccattaaagaatttactgaatta
ggttcaggttttaaaattgcgatgcgtgatttggccattcggggagccggtaatttgtta
ggtcctcaacagcatggcttcattgattcggtaggttttgatttatattcccaaatgctg
aaggaagcgatcgaacaacggaaaggtgaacagccaaaagagacaaaaagggaagttgaa
attgagcttgaattagatgcctacattccgcagtcttacattgatgatggaaaacaaaag
attgacatgtacaaaaggtttagaggcatcgaaacgtttgatgatttacaggaactgcat
gaagaattattggacagatttggcgagtatccaaaggaagtagactttttgtttaaagta
gcgaagctaaagttatatgcacggcaagaaaaagtcgaagtcattaaacaaacgaaagat
cttatcacgattcttatttcagaggaagcaagcagctcctttgacggacaaaagttgttc
gagctaacggatgaattcggtcgcatagtcgggtttggcatggaaggaaaaaggctgaaa
ttaacattgcaaattcataatttagaaactgaaaaatggctgtctattttaatgaagctg
ttggcaggtttaaaagacgcaaagaaagaagaagtttctgccggctaa
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