Aeribacillus pallidus: AP3564_15920
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Entry
AP3564_15920 CDS
T04993
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
apak
Aeribacillus pallidus
Pathway
apak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AP3564_15920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apak03019
]
AP3564_15920
Messenger RNA biogenesis [BR:
apak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AP3564_15920
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Deam_C
Motif
Other DBs
NCBI-ProteinID:
ASS91504
UniProt:
A0A165Z016
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All DBs
Position
complement(3320044..3321699)
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AA seq
551 aa
AA seq
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MKKAEKIQLIALGGVGEVGKNLYIVEIDSDIFIVDAGLKYPENEMLGIDVVIPDITYLLE
RKDRVRAIFLTNGRLDRIGAIFYILKHINAPVYGTKWTIALTKERMKQYSVTADFREVNM
RKPVHFPQVTVSFFRTFSNIPDSMGVCFHTSMGAIVHTGDFKLEQSSIGSHFLDFGKMAE
IGNSGVLCLLSDSINAERPGFSGSEALAGEMINDVMYNSPGRVVVSVAETNIYRIQQIFN
AAVETGRKIAIIGKSFAKIIELARQLRYLKADDDLFIPVSHLKKLEKQNSVLLCASDSFD
PLAEISKMAKGIHKQHHITSDDTVLIAQTPTPGQELIYSKTIDLLFRAGANVVSIDKKAF
FSGHGCQEELKLMLHLMKPKYFIPVHGEFKMQIAHAKIAQSIGIREENIFLLDQGDVVEF
TPKSAKTVTKVPSGNVLIDGLGVGDVGNIVLRDRRLLSQDGILIVVVTLNKEMKKIVAGP
EIISRGFVYVRESESLISKATKMVHDTLSSCMEDVSMDWSTMKQNIRDVLNQFLYEQTKR
RPMILPIIMEV
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagctgaaaaaattcaacttattgctttaggaggggttggggaagtcggaaaa
aacctgtacatcgtcgaaatcgactcggatatttttattgtggatgccggcttgaaatat
cctgaaaacgagatgctcggaattgatgtggtgataccggatattacatatttgcttgaa
cgtaaagatagggttcgggccatcttcttaacaaatggcagattggatcggatcggtgcg
attttctacattttaaaacatatcaatgcgccagtttacggaacgaaatggacaattgcc
ttgacaaaagaaagaatgaagcaatattctgttaccgctgattttcgcgaagtgaatatg
cgaaagcctgtacattttcctcaagtgacggtttctttttttcgcacattctcaaatatt
cctgattctatgggagtttgtttccatacgtcaatgggagcgatcgtgcatacaggcgat
tttaaattagagcaatcctcgatcggaagtcattttcttgattttggtaaaatggcggaa
atcggtaatagcggagttctttgtttgctttccgacagtatcaatgcagaaagacccggc
ttttctggttccgaagctcttgccggagaaatgatcaacgatgttatgtataattcgcct
ggaagagttgttgtatctgtagcagagacgaatatttaccgaattcagcaaattttcaat
gccgcagttgagactggaagaaaaatagcaattatagggaaatcgtttgccaaaattatt
gagcttgcaagacaattacggtatttaaaggctgacgatgatttgtttattccggtgtcg
catttaaaaaagcttgaaaaacaaaactctgttctactatgtgcaagcgattcattcgat
ccgcttgcggaaatttcaaaaatggccaaaggcattcacaagcaacatcatataacttcc
gatgatacggttttaattgctcagaccccaacacccggacaagaacttatttattcgaaa
acgattgatttgctgtttcgagcaggagccaatgttgtttcgattgataaaaaagcgttt
ttttctggtcatggctgccaagaagagctgaagcttatgctgcatttaatgaaaccaaaa
tactttattcccgttcatggtgaatttaaaatgcaaatagcgcatgctaaaattgcgcaa
tcgatcggaatacgcgaagaaaacatttttttgctcgatcaaggagatgtggttgaattc
acccctaaatctgccaaaacggttacaaaagtaccttctggaaatgtactcattgacggg
cttggtgtaggagatgttggaaatatcgtgctaagagaccggcgtttgttatctcaggac
ggcattttaattgttgttgttacgttaaacaaagagatgaaaaaaattgtcgctggtcct
gaaattatatcaagagggtttgtgtatgtccgtgagtctgaaagtttaatttccaaagct
acgaaaatggtgcatgacacactgtcgtcttgtatggaagatgtttcaatggattggtca
acaatgaaacaaaacattcgcgatgtcttgaatcaatttttatatgagcaaacgaagcgc
cgcccgatgattttgccaattattatggaggtttag
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