Aeribacillus pallidus: AP3564_18735
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Entry
AP3564_18735 CDS
T04993
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
apak
Aeribacillus pallidus
Pathway
apak03410
Base excision repair
apak03430
Mismatch repair
apak03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
apak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AP3564_18735
03430 Mismatch repair
AP3564_18735
03440 Homologous recombination
AP3564_18735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apak03400
]
AP3564_18735
DNA repair and recombination proteins [BR:
apak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AP3564_18735
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AP3564_18735
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AP3564_18735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ASS92020
UniProt:
A0A223E9Z1
LinkDB
All DBs
Position
complement(3871936..3874314)
Genome browser
AA seq
792 aa
AA seq
DB search
MLRSKFRWNRLYRDESNEEAVRALIDSLNITYLTARLLVNRGIQNVEEAKEFLHIKEPSF
HDPFLLDGMERACERIFAAIRAGEKIVVYGDYDADGVSSTAVLLTALKELGANVDFYIPN
RFSEGYGPNEHAFRMIHEKGCRLIITVDTGIAAINEADLAKRLGIDLIITDHHEPGPVLP
DAYAIIHPKLPNSTYPFKELAGVGVAFKMAHALYGKVPESLIEIAAIGTIADLVPLYGEN
RLLAKKGIEKLKTTTRPGINSLLSIAGVDKSSVNEETIGFVLGPRINAAGRLKEADPAVE
LLLTDDEEKADMLAKEIDQLNKQRQKLVQEITDEAIKEIEKNFPIEDNPVLVVAKENWNS
GVIGIVASRLVEKFYRPAIVLSIDRETGLAKGSARSIQGFDLFKNLSECRELLPHFGGHT
MAAGMTLKAEHIDELRQKMIDLANSQLSDEDFIPVKNIECACSLEHVTIKAVEELEKLAP
FGVDNPKPLFLLENVNAADVRKIGVNGNHLKMKIEEKEFELDVVGFGQGELAEEISPFAN
VSIVGELAINEWNYVKKPQLLLQDLAVPAWQLFDWRGSRGTEALLSKLPAEKRLLIAFHE
ESIKLYKDQPYIHEIHIISEIKDYKNIDVSNKYVVFLDMPPAIEFLVSAFEQGMPERIYA
IFYQHADHFFQTMPTREHFKWYYAFLTKKNSFDYKKYGEDLAKYRGWTKETIFFMTKVFF
ELEFVTINNGVITLNKKVKKRDLSESGTYQQKLDQMKLEQQLLYSSYQELKEWFEKAVLK
RDADKFLQVHEW
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgctgagatctaaatttcgttggaatcgtttatatagggatgagtccaacgaagaggct
gttcgagcattaatcgactctttgaatattacatatttgactgctcgattacttgtgaat
cgcggcattcaaaatgttgaagaagcaaaagagtttttacatataaaggaaccttcattt
catgatccttttttgttggatgggatggagcgggcatgtgagcgtatttttgcagcaatc
cgcgctggtgaaaagattgtcgtatacggtgattatgatgcggacggcgtttccagcact
gccgtcctgttgacggcattaaaggaattgggggcaaacgtcgatttttacataccgaat
cgattttcagaaggatacgggccaaacgaacatgctttccgaatgattcatgaaaaagga
tgcaggctgattataacagttgataccggcatcgcggcaatcaatgaagcggatttagcc
aaaaggcttggaatcgacctcattatcacagaccatcatgaaccggggcctgttttgcct
gatgcgtatgcgatcattcatccgaaattgccaaattcaacatatccttttaaggagctg
gcaggtgtaggcgttgcttttaaaatggcccatgccctttatggaaaggttccagaatct
ctgatagagatcgcagccattggaacaattgctgatttagtacctctatacggagaaaat
cggcttcttgcgaaaaaagggattgaaaaattaaaaacgacgacaagacctggcataaat
tcgcttctttccattgctggagtggacaaatcttccgtaaatgaggaaacgataggattt
gttttaggaccgagaatcaatgcggcagggaggctgaaagaagccgatcctgccgttgaa
ttgttgttgacagatgatgaagaaaaagctgatatgcttgctaaggaaatcgatcaatta
aataaacaaaggcagaagcttgtacaagagataacggacgaagcgattaaggaaattgaa
aaaaattttccaatcgaagacaatcctgttttagtcgtcgcaaaagaaaactggaattct
ggagtgatcggaatcgttgcttccagattggtcgaaaaattttaccgtcctgccatcgtg
ttgagcattgatcgtgagacaggtcttgccaaagggtctgcgcgaagcattcaagggttt
gatctatttaaaaacttatcggaatgcagggagcttctccctcattttggaggccatacg
atggctgctggcatgacgctgaaagcagagcatattgacgagctgcgccaaaaaatgatc
gatcttgcaaatagtcagctttcagatgaagattttattcctgtaaaaaacattgaatgt
gcctgttcattggagcatgtcacaataaaagcagtcgaagagctggagaagcttgcccct
ttcggagtcgataatccgaagccgctctttttactagaaaatgtcaatgcagcagatgtt
agaaaaattggggtaaacggaaatcatttgaaaatgaagattgaggagaaggaatttgaa
ttagatgtcgtcggctttggacagggagaattggcagaagaaatatctcctttcgcaaac
gtttctattgtcggtgagcttgcgatcaacgaatggaattatgtaaaaaagccgcagcta
ttgcttcaagaccttgccgtgccagcgtggcagctttttgattggcgaggttcaagagga
acggaggctttgctctctaaacttcctgctgaaaaacgattgctgatcgcctttcatgaa
gaatctataaaattatataaagatcaaccgtacattcatgaaattcatataatatcagaa
ataaaggattacaaaaatatagatgtttccaataagtatgttgtatttctcgatatgccc
ccggcaatcgaatttcttgtttcagcatttgagcaaggaatgcctgaaagaatttatgct
attttttatcagcatgcagaccacttttttcaaacaatgccgacaagagagcattttaaa
tggtattacgcattcttaacgaaaaaaaattctttcgattacaaaaaatatggggaagat
ttagccaaataccgtggctggacgaaagaaacgatcttttttatgacaaaggtgtttttt
gaacttgaatttgttacaataaacaatggtgtgattacattaaacaaaaaggtgaaaaaa
cgggatttatcagaatccggaacatatcagcagaagctggatcaaatgaaactggaacag
cagcttctctattcttcttatcaagaactgaaggaatggtttgaaaaggcagtcttgaaa
cgagatgccgataaatttttacaagttcatgaatggtaa
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