Alteracholeplasma palmae: BN85405900
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Entry
BN85405900 CDS
T03096
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
apal
Alteracholeplasma palmae
Brite
KEGG Orthology (KO) [BR:
apal00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BN85405900 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apal03021
]
BN85405900 (rpoD)
Transcription machinery [BR:
apal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BN85405900 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_28
HTH_10
HTH_Tnp_ISL3
KORA
DUF746
Motif
Other DBs
NCBI-ProteinID:
CCV64167
UniProt:
U4KKK7
LinkDB
All DBs
Position
640734..641996
Genome browser
AA seq
420 aa
AA seq
DB search
MELEKIIASLVKKASKSKLLSPADVLKHTKGDEELYRQVEQALMLEDIDIVSDDEEEEEA
ETRQLDDDLDEDDIEVNDESEPDEFSLSSLEVEDIQEEELLNIEKIVTNVKVDDPVRMYL
KEIGQIPLLKIDEERKYAMMVSAGREAQSQLDSFNNKEIELVEDDVKELENVVYKADFAK
EKLVEANYRLVVSIAKRYVGRGLLFLDLIQEGNMGLMRAVDKFDYEKGFKFSTYATWWIR
QAITRAVADQARTIRIPVHMVETINKMIRIQRQLVQELGREASVEEVADKMGITPEKVQN
IQRIAKEPISLEAPVGEEEDSSLGDFISDPSALSPHDFMMQEMIKKTLDEVLEESLTDRE
EKVLRLRYGLLDGKTHTLEEVGREFGVTRERIRQIEAKALRRLRAPSRQNKLKELYIGKK
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atggaattagaaaaaatcatagcatcattagttaaaaaagctagcaaaagcaaactcctt
agcccagcagatgtattaaaacatacaaaaggtgatgaagaactttatagacaagtagaa
caagctttaatgttagaagatattgatattgtctcagatgatgaagaagaggaagaagct
gaaactagacaactagatgatgacttagatgaagatgatatcgaagttaacgatgaatct
gagcctgacgaattttctttaagtagcttagaagtagaagatatccaagaagaagaatta
ttaaatattgagaaaatagtaacaaacgttaaagtggatgaccctgttagaatgtactta
aaggaaatcggacaaataccacttcttaaaattgatgaagaacgtaaatatgcaatgatg
gtttctgctggtagagaagcacaaagtcaattagacagttttaacaacaaagaaattgag
ttagttgaagacgatgttaaagaattagaaaatgttgtttataaagcagattttgctaaa
gaaaaattagtagaagctaactaccgtttagttgtttcaattgctaaaagatatgtagga
cgtggcttattattcttagatttaatccaagaaggtaacatgggcttaatgcgtgcagta
gataagtttgattatgaaaaaggatttaaattttctacatacgcaacatggtggattaga
caagctatcacaagagctgtagctgaccaagcaagaacaattcgtattccagttcatatg
gttgaaacaattaataaaatgattcgtattcaaagacaattagttcaagaactaggtaga
gaagcaagcgttgaagaagtagcggataaaatgggaatcactccagaaaaagtccaaaat
atacaacgtattgcaaaagaacctatcagtttagaagcgccagtaggtgaagaagaagat
tcatcattaggagatttcattagtgatccatctgctttatcaccacatgactttatgatg
caagaaatgattaaaaagacattagacgaagtattagaagaatcattaacagatagagaa
gaaaaagtattaagacttagatatggtcttttagatggtaaaactcatactttagaagaa
gttggtcgtgaatttggtgtaacacgtgaacgcattcgtcaaattgaagcgaaagcctta
agaagattaagagcaccatcaagacaaaacaaattaaaagaactatatatcggtaaaaaa
tga
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