Alteracholeplasma palmae: BN85406100
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Entry
BN85406100 CDS
T03096
Symbol
srmB
Name
(GenBank) DEAD box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
apal
Alteracholeplasma palmae
Pathway
apal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN85406100 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apal03019
]
BN85406100 (srmB)
03009 Ribosome biogenesis [BR:
apal03009
]
BN85406100 (srmB)
Enzymes [BR:
apal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BN85406100 (srmB)
Messenger RNA biogenesis [BR:
apal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN85406100 (srmB)
Ribosome biogenesis [BR:
apal03009
]
Prokaryotic type
rRNA helicases
BN85406100 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Collagen_bind
Motif
Other DBs
NCBI-ProteinID:
CCV64187
UniProt:
U4KKL9
LinkDB
All DBs
Position
659318..660931
Genome browser
AA seq
537 aa
AA seq
DB search
MNVLFNDLPILEQTKKALEELNFEYATPIQGLAIPKMIEGKDLIGQAQTGTGKTFAFGIP
IVERINPKLKTTQSLILCPTRELTLQVYKEIIKLVRFYPEIKVTSIYGGESYERQFKALA
LNPHIIVATPGRIIDHMERGKVDFSGLEILTLDEADEMLKMGFQDDIEKILKGTPDTRQT
VLFSATMPPFIRKIATKYQKDPEIIKVENKTLTVDSIKQYYLVVKETEKPKLLTRILDLE
KPHSGIIFANTKKNVDTITLHLQQAGYLADSLHGDLKQSQRQYVMGRFRSKQLSILVATD
VAARGLDVSDVEMVINYDLPYEDEVYVHRIGRTGRAGKKGVSYTFVGPRKTRQLAQLEKF
IKIQMELMKVPTTKEINQREMERFNLTIKDMIEKSKEVSFDHQIVDELLTKYTEREIIDG
LITSLLPEEKSYQEIEMPKNVGRNERESRFGNNSNAQRGGRGMSEMVINLGKQDQINPSV
LLELLRKRFNVYSKNVGNIKHFQTETVFELNEQAVSKMNLKQSVKVNGKNVQINKKK
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtattatttaacgatttaccaatactagaacaaactaaaaaagcattagaagag
cttaattttgagtatgctacgcctattcaaggactagcgatacctaaaatgattgaagga
aaagacttaattggacaagcccaaacaggaacaggtaaaacatttgcctttggtattcca
atagttgaaagaattaacccaaaacttaaaacaactcaaagtttaattttatgtcctaca
agagaattgactttgcaagtatataaagaaattataaaattagttagattctatccagaa
attaaagttacatcaatttacggtggcgaatcatatgaaagacaatttaaagcacttgct
ttaaacccacatattattgttgctactccaggtagaattattgaccatatggaacgcggt
aaagttgatttttcaggattagaaatattaactttagatgaagctgatgaaatgctaaaa
atgggattccaagatgatatcgaaaaaatattaaaaggaacaccagacactagacaaaca
gttttattttcagctacaatgccacctttcattagaaagattgctactaaatatcaaaaa
gatccagaaattattaaagtagaaaataaaacattaacagttgattctattaaacaatac
tatttagtagtaaaagaaactgaaaaaccaaaattattaacaagaattttagatttagaa
aaacctcattctggaattatatttgctaatactaaaaaaaatgtagatacaatcacactg
cacttgcaacaagcaggttacctagctgattcactacatggtgatttaaaacaatctcaa
cgccaatatgttatgggacgttttagatctaaacaattatctatcctagtagcaaccgat
gttgctgcacgtggactagatgtatcagatgttgaaatggttattaactatgatttacca
tatgaagatgaagtatatgttcatagaattggtagaacaggtagagctggtaaaaaaggt
gtttcatatacatttgttggaccaagaaaaacacgtcaactagcacaacttgaaaaattc
attaaaatccaaatggaattaatgaaagttccaactactaaagaaattaaccaaagagaa
atggaaagatttaacttaacaatcaaagatatgattgaaaagagtaaagaagtttcattt
gatcatcaaattgttgatgaattattaactaaatatactgaaagagaaattattgatgga
ttaattacttcattattaccagaagaaaaatcatatcaagaaatcgaaatgcctaaaaat
gtaggtagaaatgaaagagaaagtagatttggaaataactctaatgctcaaagaggcgga
agaggcatgtctgaaatggttattaatctaggtaaacaagaccaaattaacccatcagtt
ctacttgaattgttaagaaaaagatttaatgtgtactctaaaaacgttggtaacattaaa
catttccaaactgaaactgtctttgaattaaatgaacaagctgtaagcaaaatgaattta
aaacaatcagtaaaagttaatgggaaaaatgtacaaatcaataaaaagaaataa
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