Alteracholeplasma palmae: BN85410460
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Entry
BN85410460 CDS
T03096
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
apal
Alteracholeplasma palmae
Pathway
apal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN85410460 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apal03019
]
BN85410460 (srmB)
Enzymes [BR:
apal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BN85410460 (srmB)
Messenger RNA biogenesis [BR:
apal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN85410460 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Flavi_DEAD
AAA_22
NAT10_TcmA_helicase
T3RM_EcoP15I_C
Cas3-like_C_2
Utp25_C
CobA_CobO_BtuR
GPR128_GAIN_subdomA
Motif
Other DBs
NCBI-ProteinID:
CCV64623
UniProt:
U4KLD9
LinkDB
All DBs
Position
complement(1151414..1152673)
Genome browser
AA seq
419 aa
AA seq
DB search
MNTFTELKLDTPILKAIEKTGYLTPTEIQQKAIPILLDKKDILGSAQTGTGKTAAFAIPI
LQMLNQNINDKKVIRALILTPTRELANQIYENFIQYAYFIRIRTNVIYGGVPQKKQEDAL
KKGTDVLIATPGRLLDLMSQKIIDLRNIEYLVLDEADQMLDMGFIKDIYKILKQVPEKRQ
TMLFSATMPKKIEEFANSILKNPERIAVTPVTKTLDAIKQELYLVPKNNKNELLNHLIKK
LNMDSVLVFTKTKHGANKVVKELLKNNITAEPIHGNKSQAARERALLNFKNRKTQVLVAT
DIAARGLDIKQLSFVINYDLPDTPETYIHRIGRTGRAGELGLAISFCSDEEKNLLIDIEK
HIKNKLTSIENHPYGKTYVKTHDIIDNKQNDNKKNKPSNPNHYKKTKNKKFVIGTRKTK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatacatttacagaattaaaattagatacaccaatactaaaggcaattgaaaaaact
ggatatttaacgcctacagaaatacaacaaaaggcaattcctattttattagataaaaaa
gatattttaggtagcgcacaaactggaactggtaaaactgcagcatttgcaattccaata
ttacaaatgttaaatcaaaatataaatgataaaaaagtaattagagcattaattttgaca
ccaacaagagaattagccaatcaaatatatgaaaactttattcaatatgcttactttatt
agaataagaacaaatgttatctatggtggtgttcctcaaaagaaacaagaagatgcactt
aaaaaaggaactgatgtcttgattgctacgcctggaagactattagatcttatgagtcaa
aaaattattgatttaagaaacattgaatatttagttttagatgaagcagatcaaatgctt
gatatgggatttattaaagacatttataagattttaaagcaagtaccagaaaagagacaa
actatgcttttttcagcaacaatgcctaaaaagattgaagaatttgctaattctatttta
aagaatccagaaagaattgcagtaacacctgttacaaaaaccctagatgcaatcaaacaa
gaactctatttagtaccaaaaaataataaaaatgaattactgaaccatttgattaagaaa
ttgaacatggactcagtactagtttttactaaaactaaacatggtgctaataaagttgta
aaagaattattaaaaaataatattacagcagaacctattcacggaaataaatctcaagca
gcaagagaaagagctcttctaaatttcaagaatagaaagacacaggtcttagtagcaacc
gatattgctgctagaggtcttgatattaaacaattatcatttgtaatcaattacgacttg
ccagatacaccagaaacatatattcatagaatcggaagaacaggacgagcaggagaatta
ggtctagcaattagtttttgttctgatgaagaaaaaaatctattaatagatattgaaaaa
catattaaaaataaattaactagcatagaaaatcatccatacggaaaaacttatgttaaa
actcatgatataatagataataagcaaaatgataataaaaaaaataaaccaagtaatcct
aatcactataaaaaaacaaaaaacaaaaaatttgttataggaactagaaaaactaagtag
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