Alteracholeplasma palmae: BN85412720
Help
Entry
BN85412720 CDS
T03096
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta\'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
apal
Alteracholeplasma palmae
Pathway
apal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
apal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BN85412720 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apal03021
]
BN85412720 (rpoC)
03400 DNA repair and recombination proteins [BR:
apal03400
]
BN85412720 (rpoC)
Enzymes [BR:
apal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BN85412720 (rpoC)
Transcription machinery [BR:
apal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BN85412720 (rpoC)
DNA repair and recombination proteins [BR:
apal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BN85412720 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CCV64849
UniProt:
U4KLK9
LinkDB
All DBs
Position
complement(1386685..1390806)
Genome browser
AA seq
1373 aa
AA seq
DB search
MAKEKLTLHVEALNLSESTLEKLKLSGIGQLEDFNTFDLKELKSLLGDAFSEVVEVLAKY
ALPSQLGELNLNDETIEVLNNAGINDFKELLEFDRNELYHILENDKFNLQDVNDLLETYH
QRTLDGKEEEVVLEEQVVEQTAEERFQKFVQPVDKGYGSRTFSHFKIRLASPDEIRQWSY
GEVLTHETINYRTSKPEPGGLFCERIFGPTRDYQCSCGKKQTGNKGQICPKCGIEITESK
VRRERMGHIELEAPVVHTWYLKNSPSRLAILLGIKAKALEEVVYHASYIVTDPGNTPLVK
KQILSEQDYSALTEDYGNRFTALTGAEAVKKLLQELDLDKEVKSLRRRFKTASKQKRDAI
IKRLEVVEAFNNSDNKPEWMVMDVIPVQPPDLRPMVPLDGGRFATTDINDLYRRILNRNN
RLKKQKEQRAPRLITKNEKRMLQEAVDSLFDNAKRGKRAAVERNRHLKSLSDMLRGKQGR
FRQNLLGKRVDYSGRSVIIVGPDLQMYQCGIPREMAVTLFKPFILRELQEMTGVDKRSAN
NRYEKMDDDVFRALEKVVREHPVLLNRAPTLHRLGIQAFEPKLIDGKAIRLHPLVTPAFN
ADFDGDQMAVHVPLSIEAQAEARLLMLASNNILDPKDGKPVVTPSQDMVLGNYYLTIEEN
RDRVLSGYDAENRTKQHAYKNRNEGKFFVDIAEAEMAYQNHEIELHTRIILKPQAVKQTF
TKEQNSKYLVTTLGKLIFNRILPESFPYLNEPTQYNLEVQTPDIYFIDKGVNPEDVLKDI
KTPEPFKKKFLSMIIAQVFKQFHISETSKMLDRLKDLGFKYSTIAGITISFADINVYSNK
EALIAEVKEKIAGIEEWYEDGLLTDSERRNLVIQEWKDVRDKIQDGLMKEFDEDNNIFMM
SDSGARGSASNFAQLAGMRGLMNNPKGDIIEVPVQASFREGLTVSEFFISTHGARKGSTD
TALKTAESGYLTRRLVDVSQDVIIVEDDCGSHRGLVVSAIESDGKEIVPLYDRIFGRFAS
RDVIHPKTKTVIVARNELITDDIAAEIVESGLKSVEIRSVLTCNSEHGICAKDYGMNLAT
NKVVEVGEAVGVVAAQSIGEPGTQLTMRTFHTGGVASASDITQGLPRIQELFEARNPKGK
AVITEVSGKVKSVERRGGSSIVTITDELNPDKEYKYTLDPNVESLVRKGASVKAGQKLSL
GSIHPRELLRAGSAELAQQYILEEVQKVYRAQNVAISDKHIEVIIRQMLRRISVVYEGDT
ELLPGTEVSINEFKRANRKAISERKRLAVGRPILLGITRASLRSDSFLSAASFQETTRIL
TDAAIKGKVDELHGLKENVIIGGLIPAGTGILNAEHFEYDKPESFDSYDEDLD
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggctaaagaaaaattaacattacacgttgaagcacttaatttatctgaaagcacctta
gaaaaactaaaactttcaggaattggtcaactagaagatttcaatacttttgatttaaaa
gaattaaaatcattattaggcgatgcattttctgaagttgtagaagttttagcaaaatat
gcattaccaagccaattaggtgaacttaatttaaatgatgaaactatcgaagtattaaat
aatgctggaatcaatgattttaaagaattattagaatttgatagaaatgaactttatcat
atcttagaaaatgataaatttaatttacaagatgttaacgatcttcttgaaacttaccat
caaagaacattagatggtaaagaagaagaagttgtattagaagaacaagtagtagaacaa
actgcagaagaaagattccaaaaatttgttcaaccagtagacaaaggatacggaagccgt
acatttagccattttaaaattcgtttagcatctccagatgaaattagacaatggtcatat
ggtgaagtattaactcacgaaactatcaactacagaacatctaaacctgaaccaggcgga
ttattctgtgaaagaattttcggaccaacaagagattaccaatgttcttgtggtaaaaaa
caaacaggaaacaaaggacaaatttgtcctaaatgtggtattgaaattactgaatctaaa
gtacgtcgtgaacgcatggggcacattgaattagaagctccagtagttcatacatggtat
ttaaaaaactcaccttctcgtttagcaatccttttaggaattaaagctaaagcattagaa
gaagttgtttatcatgcatcatacatcgttactgatccaggaaataccccacttgttaaa
aaacaaatcttatcagaacaagactacagtgcattaactgaagactacggtaacagattt
acagcattaactggtgctgaagcagttaaaaaacttttacaagaactagacttagataaa
gaagttaaatctttacgtcgtcgctttaaaacagcatctaaacaaaaaagagatgctatt
attaagagattagaagttgtagaagcattcaataactcagataataaaccagaatggatg
gtaatggatgttattccagttcaaccaccagatttaagaccaatggtaccacttgatggt
ggacgtttcgcgacaactgacatcaatgacttataccgtcgtattttaaatagaaataat
cgtcttaaaaaacaaaaagaacaacgtgctccacgtttaatcactaaaaatgaaaaacgt
atgttacaagaagctgttgattcattattcgataatgcaaaacgtggtaaacgtgctgca
gttgaaagaaatagacacttaaaatcattatcagatatgttacgtggtaaacaaggtcgt
ttccgtcaaaacttacttggtaaacgtgttgactactcaggacgttcagtaattattgtt
ggaccagacttacaaatgtaccaatgtggtattccacgtgaaatggctgttacattattc
aaaccatttattttaagagaattacaagaaatgactggtgttgataaacgtagtgctaat
aacagatatgaaaaaatggatgatgatgtatttagagcattagaaaaagtagtaagagaa
catccagtattacttaaccgtgcccctacattacaccgtttagggattcaagcatttgaa
cctaaattaattgatggtaaagcgattcgtttacacccacttgttaccccagcgtttaac
gctgactttgatggggaccaaatggctgttcacgttccattatcaattgaagcacaagca
gaagctagattattaatgttagcatctaataacattctagaccctaaagatggtaaacca
gttgttactccatcacaagatatggttttaggtaactactacttaacaatcgaagaaaat
agagatcgtgtattaagtggttatgatgctgaaaatagaactaagcaacatgcttataaa
aaccgtaatgaaggtaaattctttgttgatattgcagaagctgaaatggcttatcaaaat
catgaaattgaattacatacaagaattatcttaaaacctcaagcagttaaacaaacattt
actaaagaacaaaacagtaaatatttagtgactactttaggaaaattaattttcaataga
attttacctgaaagtttcccatatttaaacgaaccaacacaatataatctagaagttcaa
acaccagatatttactttattgataaaggtgtaaacccagaagatgtattaaaagatatt
aaaacaccagaaccatttaagaagaaatttttatcaatgattattgcccaagtctttaaa
caattccatattagcgaaacatctaagatgttagatagattaaaagacttaggattcaaa
tattcaacaattgctggtattacaatttcatttgctgatattaatgtttactctaataaa
gaagctttaattgcagaagtaaaagaaaagattgctggtattgaagaatggtatgaagat
ggtttattaacagattcagaacgtcgtaatttagttattcaagaatggaaagacgtacgt
gataagatccaagatggattaatgaaagaatttgatgaagataacaatatctttatgatg
agtgattcaggagcacgtggtagtgcatctaactttgctcagttagctggtatgcgtgga
ctgatgaataaccctaaaggggatattattgaagttccagtacaagcatcatttagagaa
ggattaacagtgtctgaattctttatttcaactcacggtgcgcgtaaaggttctaccgat
acagcgcttaaaacagctgaatcaggatacttaactcgtcgtttagtagacgtttcacaa
gatgttattattgttgaagatgactgtggatcacaccgtggacttgtcgtttcagcaatc
gaaagtgatggaaaagaaatcgttccattatatgatagaatctttggacgttttgcaagt
agagatgttatccatcctaaaacaaaaactgttattgtagctcgtaatgaattaattact
gatgatatcgcagctgaaattgttgaatcaggacttaaatcagttgaaattagaagtgtc
ttaacatgtaactcagaacatggtatttgtgctaaagactatggtatgaatttagctact
aataaagtagttgaagttggagaagctgttggggtagttgctgctcaatcaattggtgaa
ccaggtacacagttgacgatgagaacattccatacaggtggggtggcatcagcatcagat
attacccaagggttacctcgtattcaagaattatttgaagcaagaaatccaaaagggaaa
gcagttattacagaagtatcaggtaaagttaagtcagttgaacgtcgtggtggatcatct
atcgttacaatcactgatgaactaaacccagataaagaatataaatatacactagatcca
aatgttgaatcattagtacgtaaaggtgcatcagttaaagctggtcaaaaattatcttta
ggttctattcatccacgtgagttattacgtgcaggatctgcagagcttgctcaacaatat
atcttagaagaagttcaaaaagtataccgtgctcaaaacgttgcgattagtgataaacat
attgaggtaattatccgtcaaatgttaagaagaatctcagttgtttatgaaggagatact
gaattacttccaggaacagaagtatcaattaatgaatttaaacgtgctaatagaaaagct
atttctgaaagaaaacgtttagcagtaggtagaccaatattacttggtattacacgtgca
tcattaagaagtgattcattcttatcagcagcatcattccaagaaacaacaagaattctt
acagatgcagctattaaaggtaaagtggatgaattacatggtctaaaagaaaatgttatt
atcggtggattaatccctgctggtactggtattttaaatgccgaacattttgaatatgat
aaacctgaatcatttgattcatatgatgaagatttagattga
DBGET
integrated database retrieval system
