Andrographis paniculata: 127243350
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Entry
127243350 CDS
T08689
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
apan
Andrographis paniculata
Pathway
apan03013
Nucleocytoplasmic transport
apan03015
mRNA surveillance pathway
apan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
apan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127243350
09122 Translation
03013 Nucleocytoplasmic transport
127243350
03015 mRNA surveillance pathway
127243350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apan03019
]
127243350
03041 Spliceosome [BR:
apan03041
]
127243350
Enzymes [BR:
apan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127243350
Messenger RNA biogenesis [BR:
apan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127243350
Spliceosome [BR:
apan03041
]
Complex C
Other components
EJC/TREX
127243350
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127243350
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
127243350
NCBI-ProteinID:
XP_051119282
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MADVKENDAYEEELLDYEEEDEKAPDSVNAKVNGEAVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPIAGQVAALV
LCHTRELAYQICHEFERFSTYLSDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LAREKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgtgaaggagaacgacgcatacgaagaggagcttctggactacgaggaagaa
gatgaaaaagcccccgactcggtcaacgcgaaggtcaatggagaggccgtaaagaagggt
tatgtaggaatccacagttcaggattcagagacttcctcttaaagccggaacttttaagg
gctattgtagattctggatttgaacatccatcagaagttcaacacgagtgcatacctcaa
gcaattttgggaatggatgtcatttgtcaagccaagtctggtatggggaaaactgctgtt
tttgttctttcaacattgcagcagattgaacccattgcaggtcaagttgctgctcttgtt
ctgtgccatacaagggaattggcttatcagatatgtcatgaatttgagcgattcagcaca
tatttgtcagatatcaaagttgctgttttctatggtggtgttaacatcaaaatccacaag
gaccttttgaagaatgaatgccctcacattgtagtaggaactcccggaagaatccttgcc
ctagcaagagagaaggacctttctttaagaaatgttagacatttcattctcgatgaatgt
gacaagatgcttgagtctcttgatatgagaagagatgtgcaggagattttcaaaatgaca
cctcatgataagcaagttatgatgttctctgctacactcagcaaggagattcgtcctgtt
tgcaagaagttcatgcaagatcccatggagatttatgtggatgacgaggcaaagttgacc
cttcatggtcttgtgcagcactatatcaaattgagtgagctggagaaaaaccggaagctg
aatgatctgctcgatgcgctggacttcaatcaagttgtcatttttgtcaaaagtgtcagt
agagctgcggagctgaacaagttgcttgtggagtgtaattttccatcaatttgcatacac
tctggcatgtcccaggaagaaagattgactcggtacaaaggattcaaggaggggcacaag
aggattcttgtagctacagatttggttggaagaggaattgacatagaaagagtgaacatt
gtgatcaattatgacatgccagattctgcggacacttacttgcacagagtgggtagagct
gggaggtttggcactaaggggcttgccattacatttgtttcttctgcctccgattctgat
gttcttaatcaggttcaggagagatttgaagtggatatcaaagaacttccggagcaaatt
gatacatctacatacatgccatcctag
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