Andrographis paniculata: 127243414
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Entry
127243414 CDS
T08689
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
apan
Andrographis paniculata
Pathway
apan03013
Nucleocytoplasmic transport
apan03015
mRNA surveillance pathway
apan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
apan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127243414
09122 Translation
03013 Nucleocytoplasmic transport
127243414
03015 mRNA surveillance pathway
127243414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apan03019
]
127243414
03041 Spliceosome [BR:
apan03041
]
127243414
Enzymes [BR:
apan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127243414
Messenger RNA biogenesis [BR:
apan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127243414
Spliceosome [BR:
apan03041
]
Complex C
Other components
EJC/TREX
127243414
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127243414
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
127243414
NCBI-ProteinID:
XP_051119372
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGEVKDNEAYEEELLDYEEEEDKAPDSVNGKAGGEAVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICNEFQRFSTYLPDVKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRVLA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGLKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTATYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagttaaggacaacgaagcgtatgaggaggagcttctcgattacgaggaagaa
gaggacaaggcccccgattcagtcaatggaaaggccggcggggaggcggtcaaaaagggc
tacgttggaattcacagttcaggctttagagatttcttattgaagccagagctacttcgt
gctattgtggattctgggtttgaacatccttcagaagtgcaacatgagtgcattccccaa
gccatcttaggaatggatgttatttgtcaagcaaagtccgggatgggcaagactgcagtt
tttgttctgtctacccttcaacaaattgaaccggttgctggtcaagtagctgctcttgtc
ctttgtcatacaagagaattagcgtaccagatatgtaacgagtttcagcggtttagcacc
tacttgcctgatgttaaagtggctgtgttctatggtggtgtcaacatcaaggttcacaag
gatttactaaagaatgagtgcccccatatcgttgtggggactcctggaagagtgttagct
cttgctagagacaaggatctcagcttaaaaaatgtgaggcacttcattcttgatgagtgt
gataagatgctcgagtcacttgacatgaggagagatgttcaagagattttcaagttgacc
ccacatgataagcaagtgatgatgttctctgctactctcagtaaggagattcgcccagtt
tgcaagaagttcatgcaagatccgatggaaatttatgtggacgatgaagccaaattgact
ctccatgggcttgtacagcattacatcaagctgacagagctggagaagaaccgaaagttg
aatgaccttcttgatgccctagattttaaccaggttgtgatttttgttaaaagtgttagc
cgagctgctgaactaaacaaactactcgttgagtgcaacttcccctccatctgcatccac
tctggaatgtcgcaggaagaaaggttgacacgctacaaaggtttcaaagagggcctcaaa
aggatattagttgcaactgatttagtgggaagaggaatcgacattgagcgtgtcaatatt
gtcataaattacgatatgccagattctgctgatacttaccttcacagggtcggccgagct
ggtcgctttggcaccaaagggcttgcaatcacatttgtttcatctgcatcagattctgat
gtactaaatcaggttcaagaaaggtttgaggtggacataaaggagctccccgaacaaatc
gacaccgccacatacatgccatcataa
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