Andrographis paniculata: 127246622
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Entry
127246622 CDS
T08689
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
apan
Andrographis paniculata
Pathway
apan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127246622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apan03019
]
127246622
Messenger RNA biogenesis [BR:
apan03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
127246622
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
PIN_4
OB_Dis3
Rrp44_CSD1
OB_HELZ2
Rrp44_S1
CSD2
OB_RNB
Motif
Other DBs
NCBI-GeneID:
127246622
NCBI-ProteinID:
XP_051124050
LinkDB
All DBs
Position
Unknown
AA seq
934 aa
AA seq
DB search
MLQSKSFVKKTRQGKVVKVVREHYLRDDIYCGAPICKVCDVSNARLGSTASSIVVVDTNV
VLHQIDLLENPAIDDVVVLSVVLEEVKNKNLAVYNRLRALCSNTQRRFYVFSNEYHKDTY
VKTESGESPNDRNDRAIRVAAQWYQNHLGSAVQVVLVTNDRDSRNKAVNDGILANTVEAY
VKSLGQPSLLDLIVQPPSEDVPMVDADDLRPLKRKVIYPEHKPMSEITSGLHRGIYHQGK
LRVNRYNPFEAYVGSESIGDEIIIFGRSNMNRAFDGDIVAVELLPQDQWHEEKSLTMANE
DEEEDDDVHLVPSSADDAPRVGNMAQDGDKNTMPTRPSGRVIGIIKRNWHSYCGSLDPMP
MPGGQGGIAHALFVSKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDRLSRYPSGHYVRTI
GEIGDRDTESEVVLIENDIDARPFSTQVLACLPCLPWSVSSEDLSNPIRKDLRHLRVFSV
DPPGCKDIDDALHCLPLPNGNFEVGVHIADVTNFVHPGTPLDDEAAQRGTSVYLVERRID
MLPKPLTEDVCSLRADVERLTFSVIWEMTPEAEIISTRYTKAIIKSRAALSYVEAQARMD
DSRLMDSLTTDLRNMNTLAKIMRQKRIDRGALTLASAEVKFQIDTETHDPLDIGMYQIRE
ANQMIEEFMLAANISVARKILEHFPLTSLLRRHPTPTKEMLEPLLQTAAAVGLSLDVTSS
KALADSLDNAVGSDPYFNKLIRILATRCMTQAVYFCSGDLSPPEFFHYGLAAPMYTHFTS
PIRRYADVIVHRLLAAALGIYKLPDIFQDRPRLASIADNLNYRHKNAQMASRASVELHTL
IYFRNRPTDTEARILKIRSNGFIVFVPKYGIEGPVYLMARGQKGVGGDWIIDEQQQSIRK
ADGKVSYGVLQTVNIHLEIVEPQPHRPKLQLTLI
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgttgcagagcaagtctttcgttaagaaaacgaggcaagggaaagtagtcaaggttgta
agggagcattatttgcgggatgatatatactgcggcgcgccaatttgtaaagtttgtgat
gtttcaaacgcgcgcctcggctcgacggcgtccagtattgtcgttgtggacaccaatgtt
gttcttcaccagattgatttgttggagaatcctgcaatagatgatgtggtggtgctttca
gtggtgttggaggaggtaaagaacaaaaatcttgctgtatacaacaggcttagggcgctc
tgcagcaatacccaaaggaggttttacgtattctcgaatgaataccacaaggatacatat
gtgaagactgagagtggtgaaagtcctaatgataggaatgacagagcaattcgagtggct
gcccaatggtatcagaatcatctgggtagtgcagttcaggtcgtgcttgttacaaatgac
agagatagcagaaacaaggctgttaatgatgggattcttgcgaatacagttgaggcatat
gtcaagtctcttggccaaccatcattgcttgaccttattgtgcagcctccatctgaagat
gttccgatggttgacgctgatgatctaaggcctttaaagagaaaagtaatatatcctgag
cataaacccatgtcagaaattacttcaggtttgcatcgtggaatataccaccaagggaaa
ctcagggttaatcgctacaatccatttgaagcatatgtcgggagtgaaagtattggtgat
gaaattattatttttggacgttctaacatgaacagagcttttgatggtgatatagtagca
gtggaacttttgcctcaagatcagtggcatgaggagaaatctctgacaatggcaaatgaa
gatgaggaggaggatgatgatgttcatttagttccaagcagtgctgatgatgctcccaga
gttggaaatatggcacaggatggggacaagaatacaatgcctactcgcccaagtggccgt
gttattggcattataaaacgtaactggcactcttattgtggatctttggacccaatgccc
atgcctggaggtcagggtggtattgcacatgctctatttgtctccaaagataggagaatt
cctaaaattcggatacaaacaagacagcttggaaatctattggacaaaagaatcattgtt
gctgttgattcatgggaccgtttatctcgatatccttctggacattatgtaagaacaatt
ggtgaaataggtgacagagatactgaaagtgaggttgtcctgatagagaatgatatcgat
gcaagacctttttctactcaagttttggcatgtttgccatgcctaccatggtctgtatct
tctgaagatttgtccaatcccatcaggaaagacttgcgacatctacgcgttttcagtgtg
gatcctccaggatgcaaggacattgatgacgcactacactgtttgcctcttccaaatgga
aattttgaagtgggagttcatattgctgatgtcacaaattttgttcaccctggaaccccc
ttggatgatgaggctgcacagaggggtacttctgtttaccttgttgagcggcgtattgac
atgttaccgaaacctctgacggaagatgtttgctcattacgtgctgatgtagagagactg
acattttccgtgatatgggaaatgactcctgaagcagagattatttctacgaggtacaca
aaagccattatcaaatcgcgtgcagcattgtcatatgtggaggctcaggcaaggatggat
gatagtcgcttaatggattccttgacgacagatttgcgaaatatgaatactttagcaaag
ataatgcggcaaaagcgcattgatagaggagcattaacccttgcctctgctgaagtgaaa
tttcaaattgacactgaaacacatgatcctcttgatattggtatgtatcaaattcgagaa
gccaaccagatgattgaagagtttatgcttgctgctaatatatctgtggctaggaagatt
ctggaacattttcctctcacttcactgttaagacggcatccaaccccaacaaaggagatg
cttgagcctttattgcaaacagctgctgcagttggtctcagtttggatgtgacatcttca
aaagcactggctgattcacttgataatgcggtgggcagtgatccatacttcaacaagctg
atccgcattctggcaacaagatgcatgactcaggctgtgtacttctgtagtggagatcta
agccctccagagtttttccattatggccttgccgcccctatgtacacccatttcacttct
cccataagaagatatgccgatgtcattgttcatcgtttgcttgctgctgcattggggata
tacaagctccctgacatattccaggacagacctcggcttgctagcattgccgacaatcta
aattatcgccacaagaatgcccagatggctagccgggcatcagttgagctccatacacta
atttatttccggaacaggccaactgatactgaggcaagaatactcaagataagatcgaat
ggcttcattgtctttgtgcccaaatatgggatcgaaggtcccgtgtacttgatggcgaga
ggccaaaagggagttgggggagactggattatcgatgaacaacaacagagtattaggaaa
gccgatggtaaagtttcctacggcgttctgcagactgtgaatatccacttggagatcgtc
gagccgcagccacaccggccgaagcttcagctcactcttatatga
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