Andrographis paniculata: 127250948
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Entry
127250948 CDS
T08689
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
apan
Andrographis paniculata
Pathway
apan03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
apan00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127250948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apan03021
]
127250948
03019 Messenger RNA biogenesis [BR:
apan03019
]
127250948
Transcription machinery [BR:
apan03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127250948
Messenger RNA biogenesis [BR:
apan03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
127250948
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-C2H2
DUF2225
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
127250948
NCBI-ProteinID:
XP_051130401
LinkDB
All DBs
Position
Unknown
AA seq
1021 aa
AA seq
DB search
MEMEGTRRSFDRSISKEPGLKKPRLTEDHAAPHRSSGDRTGVVQRAAVANSGGGDSRVQR
ELDSLRGPYQSGNQLHQELVNQYKTALSELTFNSKPIITNLTIIAGENLHSAKAIAATVC
SNILEVPREQKLPSLYLLDSIVKNIGRDYIKYFAPRLPEVFCKAYKQVDPSVHQGMRHLF
GTWKGVFPQHILQMIEKELGFTTTANGLSSGKTVSRPEPQAQRPAHSIHINPKYLEARQR
LQTTRGRGTGSDTSGSVISTHEDIEASERTTSITLERLSGDPYDKSVHHQYKDKVKEAVR
DNSSTIPYIESEYGNSVAGSLSLGGRKVSEKVKDQGLGMSQHESGRNATGRVFNIKNGLY
TSANSNSHLQLKQNFASRGPNGITESWKNFEEEEFMWDEMVNKPTEHYAADSPAKDNLMT
DSIENLDFDSHFQRPQSLHDIGARVPDEAPVSSLSGTHLPLSIPEEQHRSGGVAGKAFLS
QHSSIPKGQNLKLPADGAQGFKDPITQQTRGATSTQSGVHLRHPSPSLSADNQTKLLTST
AERKPTPTGPPKDPRRPPQPRNPGSNDQASQNSQSLSSKGVSKKIPAQSLQTSSGVSSAH
SLQPREHLLSSQKRKLEDVTGADRLLAAQIPGCGSRSVKGKSLPDLSNSHRVDSLRQPIT
SSMVTSTVKIGIPGQEAGRGPSSKGARPPLPSSSPPSLVSSQPSNKNLELPGLCHTKLEL
ASLPPDSPSSSSAGARSEQAPSISNSASDPVSSLLSSLVSKGLISSSKSDLLSSGSTHKS
NRLDQSPEVLKGSSTPDSAAPVATGKPFLSTTASASNGLICKPSLSSTDELIVSASDSLL
QSPKVFKNLIGFEFKSDILRTLHSDVLDDLHSDLPFQCSRCGLRLKLQESLDRHMEWHEL
RIPEQNPLHKNSRSWYSDVANWFTGASQVPIGDSLSDLFAELESSEMLPADENQCACILC
GELFEDFYSQERNEWMFKEAAYLSYLSSDLNERIGTKVDDAACLGPIVHIDCMSQDFNLK
S
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagggcacacgcagatcatttgatagatctatctcaaaagaaccggggctg
aagaagcctagactcacagaggaccatgcggcgccacatcggagctccggcgatcgtacc
ggagtcgttcaacgcgcggcggttgcgaactccggcggcggcgattcaagggttcaacgt
gaacttgattctctacgtgggccctaccaatcgggtaaccagcttcatcaggaactggtt
aatcagtacaagaccgctttatctgagctgacattcaactcgaaacccattattactaat
ctaactatcatcgcgggagagaatttgcactcggccaaggccattgctgcaactgtctgc
tccaatattcttgaggtccctagggagcaaaagctgccatctctatatctattagacagt
attgtgaagaacattgggagagattatataaaatacttcgctcccagattacccgaggtt
ttctgtaaggcctataaacaggttgatccttcagtccatcaaggcatgcgtcacctgttt
ggcacctggaaaggggtcttcccccagcatattcttcagatgattgagaaggagcttgga
tttactactacagccaatggtttgtcttcagggaaaacggtgtctaggccagagccacag
gcacaacgccctgcacacagcattcacataaatcccaagtatttggaggcaaggcagagg
ctgcagaccactaggggaagaggtactggcagtgatactagtggatctgttatcagcaca
cacgaggacattgaagcttctgagagaaccacatccataactttggagagattgtctggt
gatccatacgataagtctgtccatcatcagtacaaagataaagtaaaagaggctgttcgg
gacaacagttcaacaataccatatatagagtctgaatatggcaatagcgtagcagggagt
ttgagcttgggaggtagaaaggttagtgaaaaagttaaagatcaaggtttgggcatgtcc
cagcatgaatctggtcgtaatgcaacggggagggtatttaatataaagaatggcctctac
acatctgccaactccaactcacatctacagctaaagcaaaattttgccagtaggggtcca
aatggaatcaccgaaagctggaagaactttgaggaagaggagtttatgtgggatgaaatg
gttaataaacccaccgaacactatgcagctgattctcctgcaaaagataatctcatgact
gatagtattgaaaatttggactttgacagccatttccagaggcctcaaagtttacatgat
attggggccagagttcctgatgaagccccagtcagttccctatcagggacacatttacca
ttatccattcctgaggagcaacatcgatcaggaggagtagctgggaaggctttcttgtcg
cagcatagcagcattcccaaaggccaaaatctgaagttacctgcagatggagctcaaggg
ttcaaagatcccattacacaacaaacacgcggagctacatcaactcaatccggagtgcat
ctgcgccatccatctccttctctctcggcagacaatcagactaaattattaaccagtact
gctgagcgcaaaccaacccccactggccctcctaaggatccaagaaggcctccacaacca
agaaatccagggtctaatgaccaagcttcgcagaattcacaatctttatcatcaaagggt
gtttccaagaagattccagctcaaagtttacagacatcttccggcgtcagttccgcacat
tcccttcagcccagggaacatcttctgtcatcccaaaagagaaaacttgaagatgttact
ggcgccgacagattgctggcagcccaaattccaggatgtgggagccgctcagtgaaaggg
aaatcattgccagatctatcaaattcccatagagttgactcccttcgacaaccaattact
agcagcatggtgacatctacggtaaaaattggaatacctggccaggaagctggacgtggg
ccatcctcaaagggagcacgaccacctctgccgagcagctcgcctcccagccttgtctcg
tctcaaccctcaaataagaacttggagcttcccgggctgtgccacacaaagttagaactg
gcctccttgccacctgattccccttcctcatcttcagcaggtgccaggtcagaacaggct
ccaagcatcagtaattccgcatccgatccagtttctagtcttctaagttcattggtgtca
aaaggcttgatatcctcttccaagtcggatctactttcatctggttctacccacaaatcc
aatcgacttgatcaatctcctgaggttttgaaaggtagttcgactccagattctgctgct
cctgtggcaaccggaaagcctttcttgtctactactgctagtgcctcaaatggtttaatc
tgtaagccttctttgtcctccacagacgagcttattgttagtgcctcggatagtttactc
cagtcgccgaaagtgtttaaaaatcttattggttttgaattcaagtcggacatacttcga
acgctgcattcggatgtgcttgatgatctgcactctgaccttccgtttcagtgcagccga
tgtggccttcgactaaagcttcaagaatcattagatcggcacatggaatggcatgagctg
agaattcctgagcagaatcctctgcacaagaattcgaggagttggtattctgatgtagct
aactggtttactggagctagtcaggttcctatcggggacagcctgtcagacttatttgcg
gaattggaaagtagtgagatgttgccggcagatgaaaatcagtgtgcctgcattttatgt
ggtgagttgttcgaagatttctacagccaagaaagaaatgaatggatgttcaaagaagct
gcgtacttgtcttatctatcttcggatttaaatgaaaggattggaactaaagtcgacgat
gcagcatgtttgggtcctattgtccatatcgactgcatgtcccaagactttaatctgaag
tcatga
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