Andrographis paniculata: 127252445
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Entry
127252445 CDS
T08689
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
apan
Andrographis paniculata
Pathway
apan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127252445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apan03019
]
127252445
03041 Spliceosome [BR:
apan03041
]
127252445
03009 Ribosome biogenesis [BR:
apan03009
]
127252445
03016 Transfer RNA biogenesis [BR:
apan03016
]
127252445
Enzymes [BR:
apan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127252445
Messenger RNA biogenesis [BR:
apan03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
127252445
Spliceosome [BR:
apan03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127252445
Complex C
U4/U6.U5 tri-SnRNP related factors
127252445
Ribosome biogenesis [BR:
apan03009
]
Eukaryotic type
Pre-60S particles
Helicases
127252445
Transfer RNA biogenesis [BR:
apan03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
127252445
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
NPR1_interact
Motif
Other DBs
NCBI-GeneID:
127252445
NCBI-ProteinID:
XP_051132573
LinkDB
All DBs
Position
Unknown
AA seq
997 aa
AA seq
DB search
MGSEKRKQLEESKEEDSEAPPLKQQRENGRVVMMMNEPVACLHDVSYPEGYVPRPSATGL
INQQHSKPAKEFPFTLDPFQSEAIKCLDNGESVMVSAHTSAGKTVVALYAIAMSLRNKQR
VIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVVR
EVAWIVFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFSDWVAKVHQQPC
HIVYTDYRPTPLQHYVFPSGGEGLYLVVDEKGKFREDSFQKSLNALIPTNGDKKKENGKW
QKGLVLGKAGEESDIFKMVKMIVSRQYDPVICFSFSKRECEVLAMQMAKLDLNNEDEKTN
IETIFWSAMDMLSDDDKKLPQVSNMLPVLKRGIGVHHSGLLPILKEVIEILFQEGLIKCL
FATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDDRGICILMV
DEKIEPSTAKSMLKGSADPLNSAFHLSYNMLLNQIRSEDGDPESLLRNSFYQFQADRAIP
DLERQAKVLEEERDSIVIDEEDSIENYYSLLQQYKDLKKDVRDIVFSPKHCLPFLQPGRL
VCIQCSKNDESSPPFSMHDEVTWGVIINFERVKGGSEDDAKRKVEDASYTVDVLTKCKVQ
KDGVSRRTIKTLPLNEPGEAAVVSISISQIASLSSIRLIIPKDLLPLEARENTLKKVSEV
ITRFEKEGVPLLDPEDDLKVQSSSYRKASRRIEALENLFEKHKIAKSPLIEQQLKVLHTK
KEIIEKIKSIKRTLRSSSVLAFKDELKARKRVLRRLGYITSDDVVELKGKVACEISSADE
LTLTELIFSGLLKDIKVEEMLSILSCFVWQEKLQEAQKPRDSLELLFTQLQETARKVAKV
QLECKVQIDVENFVSSFRPDIMEAVYAWAKGSKFYEIMEMTPVFEGSLIRAIRRLEEVLQ
QLIQAAKSIGETDLEAKFEDAVGKIKRDIVFAASLYL
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggggtctgagaagaggaagcagctggaagagagtaaggaggaggattccgaagctccg
ccgctgaagcagcagagggagaatggccgtgtggtgatgatgatgaatgagcccgtggct
tgcctgcacgacgtatcgtatccagagggttatgtgccccggccatcggccaccggcttg
ataaatcaacagcactccaagccggccaaagaattcccctttactctcgatccttttcag
tccgaagctattaagtgcctcgacaatggcgaatccgtcatggtttctgcccatacctct
gccgggaagactgttgtggcactgtatgcgatagctatgtcgctgcggaacaagcagcgt
gttatatacacatctccgatcaaggcgctcagcaatcaaaagtaccgagagttcaaggag
gagttttctgatgtgggattgatgacaggtgatgtcaccattgatcccaatgcttcttgc
ttggtgatgactacggaaatttggcggagcatgcagtacaaaggatctgaggttgtcagg
gaggttgcatggattgtttttgatgaagtgcattacatgagagatagagagagaggtgtg
gtgtgggaagaaagcattgtaatggcccctaagaactcccgatttgtgtttctctcagct
actgttcctaatgccaaggagttctctgattgggttgctaaggttcaccagcaaccatgt
catattgtttatactgattatcggcctacacctcttcagcattatgtctttccttctgga
ggagaaggtctttatttagtggttgatgaaaaagggaagtttcgggaagatagctttcag
aaatccctaaatgcactaataccaactaatggagacaaaaagaaggagaatggaaaatgg
cagaaaggcttagtgttgggtaaagcaggtgaagagagcgatatatttaaaatggtgaaa
atgattgtatcacgtcaatatgatcccgtcatatgtttcagttttagcaaaagagaatgt
gaagttcttgctatgcagatggctaaactggacttaaacaatgaggacgagaaaactaat
attgaaacaattttctggagtgctatggatatgctatcagatgatgataagaagttaccg
caggtttcaaatatgcttccggtgttgaagcgaggaattggtgtgcatcactctggtttg
ctgcccattctgaaagaagttattgaaatcctgttccaggaaggactcatcaagtgtttg
tttgctactgagacgttcagcataggtttgaacatgcctgcaaaaactgttgttttcacc
aatgttcgcaaatttgatggagataagtttaggtggttatctagtggggagtacattcag
atgagcggtcgtgctggtcgacgtggaattgatgatcgtgggatctgtattcttatggtt
gatgagaagatagaaccttctacagccaagtcaatgctgaaaggcagtgcagatcctctg
aacagtgcatttcacttgagttacaacatgcttttgaaccaaatccgatctgaagatggt
gatcctgagagtctgttaagaaattctttctatcagttccaagcagatcgagccattcct
gatcttgagagacaagcaaaggttcttgaagaggagagagattctattgttatagatgaa
gaagatagcatagaaaattattactctctgctacaacaatataaagatttgaagaaggat
gttcgagacatagttttttctccaaaacattgtttgccgtttctgcagccaggcaggctt
gtttgtattcaatgttcgaagaatgatgagagttcccctcccttctctatgcatgatgaa
gttacttggggagtgataattaattttgagagggttaaaggcgggtctgaagatgatgct
aagaggaaggtggaagatgcaagctacactgtggatgtcctcactaagtgtaaagtgcag
aaggacggagtttccagaagaacaatcaagactcttccattaaatgaacctggggaggct
gctgttgtttcaatttctatttcacagattgcttctttgagcagtatccggctaataata
ccaaaagatcttcttcctctagaagctcgagaaaatacactgaagaaagtgtccgaagtc
atcactagatttgaaaaagaaggtgttcctcttctagatcctgaagatgatttgaaggtt
caaagtagctcttataggaaagcgtcaagaagaatagaagccctggagaacctttttgaa
aaacacaaaatagccaaatctccactgatagagcaacagctcaaagttctgcatacgaaa
aaagagattattgaaaaaatcaaatctataaagagaacattgagatcttcctcagtcttg
gcattcaaagatgaacttaaggcccggaaaagggtacttaggagactcggatatattaca
agtgacgatgttgtggagttaaaggggaaggttgcgtgtgagatcagcagtgcagatgaa
ttaacgttgacagagcttatcttcagtggacttctgaaggacataaaagtggaggagatg
ctttcaattctatcatgttttgtatggcaagaaaagcttcaggaagctcaaaagcctcgg
gattcactcgagttactattcactcaattgcaagaaacagcacgcaaggtagccaaggtc
cagctcgagtgcaaggttcagattgatgtcgagaatttcgtaagttctttcagaccagat
attatggaagctgtttacgcctgggccaaagggtccaaattctacgaaataatggaaatg
acaccggtcttcgagggcagccttatccgcgcaatcaggagattggaagaagtccttcag
cagctaattcaagcagcaaaatccatcggcgagacagatcttgaagcgaaatttgaggat
gccgttggcaagatcaagagagacattgtcttcgccgcatcattgtacctgtaa
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