Andrographis paniculata: 127253221
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Entry
127253221 CDS
T08689
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
apan
Andrographis paniculata
Pathway
apan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127253221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apan03019
]
127253221
Enzymes [BR:
apan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
127253221
Messenger RNA biogenesis [BR:
apan03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127253221
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
127253221
NCBI-ProteinID:
XP_051133626
LinkDB
All DBs
Position
Unknown
AA seq
702 aa
AA seq
DB search
MRVIPLVRALARARFSLPNRCLCSRTPPAEADVALKHVTKSNFEQALNELRGDVKHADFV
SIDLEMTGITSAPWRECFNFDRPDIQYLKIKDSAEKFAVVQFGVCPFRWDSNSNAFIAYP
YNFYIFPRQEIPGDGSSSEFLCQTRSLEFLAKYEFDFNACIYEGISYLSRSQEEEALEQL
DSLYKLTLDSSPKLGNDVDAKLIRLADILFSERIKKTLSEWRDALLHKRSRGSEFQGSLN
DTKQKFETTFFHRRPALVLNGLSSRQLGMTKMVVGMLKDLAYVHVSSETSPLQHMVVYTD
STADRELLMMEVKARQRQEAEMKIKSAIGFRHVFDLLSSEKKLIVGHNCFLDLAHVFRKF
VAPLPETAEEFVSSLQSYFPHIIDTKLLLNTDIELFRLLKSGGTSLSKAFTLLCPPIVLS
GAGNVVEDKRVKVEVQVDGQRFSNWNSGSKHEAGYDAFMTGCVFSQACFHLGIDFNSLDL
LQHQKLEKYINHLYLSWMSGDIINLKTGNILQDSLGSTNINRRHLPKTIYSNMILLWGLP
RTLRTADIKNCLHKAFGAISIASFHHIDETAAFIQFSQPELVSDFLSLKDLLEKDTGPVS
VLHPLSNILAGGRVRAARYDTYKKICSSPISETMFADQAAAVGVDAEPGSMETTEVEISS
SNEVCEAICLDGDGVSELQSNCISSTDGFVDSFQLSKAAIRT
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgagggtgattcctctggttcgggccctggcccgagcccgattctcgttaccaaaccgc
tgtctgtgctcccgcactccaccggcggaggccgacgttgcgctcaagcacgtcacgaag
tcgaattttgagcaggcgctgaacgagctgcgaggcgacgtcaagcatgcggatttcgta
tcgatcgacttggagatgacggggattacgagcgcgccgtggcgagagtgtttcaatttc
gaccggccggacattcagtacttgaaaatcaaagattccgccgagaagttcgccgtcgtc
cagttcggagtctgccccttccgctgggattccaattcgaacgccttcattgcttatccg
tacaacttttacatatttccacggcaggaaattcctggtgatggctcatcttctgagttc
ctttgccagacaaggtcattggaattcttggcaaaatacgagtttgatttcaatgcgtgt
atttatgaaggaatatcttatttatccagaagccaagaggaagaagcattagagcagttg
gactcactgtacaagttgactctggattcatcacctaagttgggaaacgatgtggatgca
aagttgatcaggttggcagacattctattttctgaaagaataaagaagacgctcagcgaa
tggcgagatgcattattacacaagagaagtcgaggatccgagtttcaagggagcttgaat
gacacgaaacaaaaatttgagacaacgttcttccataggcgtcctgcccttgtattgaat
ggcttgagttcccgtcagttgggtatgactaagatggttgttggaatgctcaaagatctt
gcttatgtccatgtatccagtgaaacatctcctttacaacatatggtagtctatacggat
tctacagcagatagggagttgcttatgatggaagttaaagctcgtcaaaggcaagaagct
gagatgaagattaaatctgcaattgggtttcggcatgtttttgatctcctttcctcggag
aaaaagctgattgttggtcacaattgttttcttgaccttgctcatgtctttcgtaaattt
gttgcccctcttcctgagactgctgaagaatttgtctcatctcttcaatcatattttcca
cacatcatcgacactaaactgctgctgaatacagacattgagctattccgtctcctaaaa
agtggcggcacttcactttccaaagctttcaccttactctgtccacctattgttctaagt
ggtgctggcaatgttgttgaagataaacgagttaaagtcgaagttcaagtggacggtcag
aggttttcaaattggaactcgggatccaagcacgaagcaggatacgatgcgttcatgaca
gggtgcgtcttttcccaggcctgctttcatttaggtattgatttcaactctctagatttg
ctccagcaccagaagctcgaaaagtacatcaaccatttgtatctcagctggatgagcggc
gacattataaatctgaaaaccgggaatattctccaagactctctcggctccacaaacatc
aatcggaggcatcttcctaaaaccatctactcaaacatgattcttctgtggggtctgccg
cggaccctacgaacggcagatataaaaaattgcttacataaagctttcggagcgatatcc
atcgcgtcgttccatcacatagatgaaactgcagccttcattcagttcagccaaccggag
ctcgtctccgattttctctccctgaaggatttgctggagaaggacaccgggcctgtgtcg
gttttgcatcctctatcgaatatactggccgggggacgcgtccgtgcagccaggtacgat
acgtataaaaaaatttgcagttcgcctatttcggagactatgtttgcagatcaagctgcg
gctgttggagtggacgccgaacccggatcgatggagacgacggaagtcgagatctcgagc
tcgaacgaggtatgcgaagcgatatgtttggatggtgatggtgtgagtgagttacagtct
aattgcatttcttcaactgatggatttgtggattcttttcaactttcgaaagcagcaatt
cgaacataa
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