Andrographis paniculata: 127256582
Help
Entry
127256582 CDS
T08689
Name
(RefSeq) pre-mRNA-splicing factor prp12-like isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
apan
Andrographis paniculata
Pathway
apan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
apan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127256582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apan03021
]
127256582
03041 Spliceosome [BR:
apan03041
]
127256582
03036 Chromosome and associated proteins [BR:
apan03036
]
127256582
Transcription machinery [BR:
apan03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
127256582
Spliceosome [BR:
apan03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
127256582
Complex B
127256582
Complex C
U2 SnRNP specific factors
127256582
Chromosome and associated proteins [BR:
apan03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
127256582
TFTC complex
127256582
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
127256582
NCBI-ProteinID:
XP_051138625
LinkDB
All DBs
Position
Unknown
AA seq
1378 aa
AA seq
DB search
MSAAVEESSSSRPHTSTTPAAASRSPSHNAAGAFYLAKTVLRGSVVLQAVCGHFRSPSSY
DVVFGKETSIELVIIDEDGIIQSISEQPVFGTIKDLAVLPSNKAVYDHSPKILGKDTLIV
ISDSGKLSFLFFCNEMHRFFPLANVQLSAPGNSRNQVGRMLAIDSSGCFVAASAFEDQLA
IFAISTSPNSTDIIDKRIFCPPEKDGRLKTARGSTNISGTIWSMCFISKDYRQPSKEHKP
LLAILLNRWGSFYRNELLLLEWNIDEHAVNVVYQFAEAGPLAYHIVEVPHSNGFAFLFRA
GDIVLMDFRNSNAPSCVYRTSLNFTPVEEKKIKHIIRIPDIMDEEGIHSVAASALLELGD
LNKSDDPMSIDDYGSVQPGSNYVCSWCWEPGAINSSRIIFSADSGELYAIEMIFEPDGSL
RVNLSDCLHKSLPCNVLLWLEGGFVVAIADMADGTVFKFEEGVLKYRSSIQNIAPILDMC
IVDYPDEKHDQIFACSGMASEGSLRIIRSGISVEKLLKTAPIYQGVTGTWTLKMNVSDLY
HSFLVLSFVEETRVLSVGVSFADVTELVGFQPDVCTLACGVVGDGMIVQIHQFGVKLCLP
VRALHPEGIASSSPVCTSWFPDNMNISLGAVGQGRIVVATSSPCYLFILGIISSSASQYE
VYQIYCVKLQNELSCISIPVEHPQQNTVLMRFAADYNLTPDVGNLFVVGTHRPSVEVVSF
THDKGFQVLAVGIISLTNTMGTTISGCVPQDVKLVLVDRMYVLSGLRNGMLLRFEWSCNT
TLSSTEPPCAQAVGSWMMNSPVLSNSIAPNTKIPAIFMSNTSGRTKGEFPVNLELIAVRR
IGITPVFLVSLSDSLDADMIALSDRPWLLQTARQSLSYTSISFQPSTHVTPVCSIECPRG
ILFVAENSLHLVEMVPSKRLNVQKFHIGGTPRKILYHNESRLLLVMRTELDNDSCSSDVC
CVDPLSGSVLSSFKFDPGETGKCMQLVKVGNEHVLVIGVSQSAGPAIMPSGEAESTKGRL
VILCLDQMQNSDSCSVQRNSPIGGYGGEQLSSSSLCSSPDDNSCDGIKLEETEAWHLRLA
YSTNWPGMPIAICPYLDRYFLASAGNSFYVCGFPNDNSQRVRRLAVGRTRFTIMTLSVHF
TRIAVGDCRDGILFYSYHEDSRKLEQVYCDPVQRLVADCVLMDVDTAFVSDRKGSVVVLS
CADHLEDNASPERNLTLSCSYFMGEIAMSMRKGSFSYKLPADDMMKNYGTASNSNNSSRN
CIMASTLLGSIVIFIPITREEYELLEDVQARLVVDPLTSPILGNDHNEFRSRGSRAGIPK
VLDGDILAQFLELTTMQQEAVLTSPQHSNEAVSGLKPSMPVMVNQVVRLLERVHYALS
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctgcagtagaggagtcttcttcgtcccgcccacatacatccaccacccctgct
gccgcttcccggtcaccctcccataatgctgccggcgccttttatttggccaagaccgtt
ctcagagggagcgtcgttcttcaagctgtctgcggccactttcgctccccctcttcatac
gacgttgtctttggcaaggagacatcaatagaactggtgataattgatgaagatgggata
attcaatcaatttctgaacaacctgtgtttggcacaattaaagatcttgcggtccttccc
tcgaataaagctgtttatgatcatagtcctaagatacttggaaaggatacgttgattgtc
atttcagattctggaaagctgtcatttctcttcttttgcaatgaaatgcacaggtttttc
ccattggctaatgttcaactttctgcacctggaaactcaaggaatcaagttggaaggatg
ttggcaattgattctagtgggtgttttgttgctgctagtgcatttgaggaccaattggct
atttttgcaatctcaacatctccaaatagtactgatatcattgataagaggattttctgc
cctcctgaaaaagatgggcgcttaaaaactgccagaggctctaccaatatttctggtact
atatggagcatgtgctttatctcaaaggattaccgccagcctagtaaagagcacaaacct
ttactggccattcttctaaataggtggggatctttctatagaaacgagcttctgttattg
gaatggaatattgatgaacatgctgtgaatgtggtgtatcagtttgctgaagctgggcca
ttagcatatcatatagttgaagtcccccattctaatggatttgccttcctgttcagggca
ggtgacattgttctaatggatttcaggaattctaatgccccctcttgtgtctatagaaca
agcttaaattttacgccagtggaggaaaaaaagattaaacacattataagaataccagat
ataatggatgaagaaggcattcatagtgttgctgcctctgctttattggagcttggtgac
ctaaataaaagcgatgatccaatgagtattgatgattatggtagtgtgcagcctggttcc
aattatgtttgctcatggtgttgggaacctggtgccattaatagttcacgaattatattc
agtgccgactctggggaactttatgctattgaaatgatttttgagcctgatggaagcctc
agggtcaatttatccgattgtctccataaaagtttaccatgtaatgttctgttatggctt
gaaggtgggtttgtggtggcaattgctgacatggctgatgggacggtgttcaagtttgaa
gagggagttctgaaatacagaagttccattcaaaacattgccccaatcttggatatgtgc
atagttgattatcctgatgagaaacatgatcaaatattcgcatgttctgggatggcatct
gagggatccttgcgaataattcggagtggtatcagtgtggagaaattattgaaaactgct
ccaatttatcaaggggtaactgggacatggacactcaaaatgaatgtctctgacttgtat
cattcttttcttgtgttatcatttgttgaagagaccagggttctctctgttggtgtcagc
tttgcagatgtgactgaattagttggttttcagcctgatgtctgcacattggcttgtggt
gttgtgggtgatggcatgattgtccagattcatcaatttggagtaaaactttgtttgcct
gttagagctttacatcctgaaggaattgcttcctcgtcaccagtatgcacatcatggttt
cctgataatatgaatataagcctgggagctgttggacagggcaggatagtagtggcaaca
tccagtccatgctacttgttcattcttggcataatttcttcctcggccagtcagtatgaa
gtataccaaatctactgtgtaaaattgcagaatgagttgtcctgtatttccataccagtg
gagcacccccagcagaatacagttttgatgcgttttgcagctgactacaacttaactcct
gatgttggaaatttgtttgttgtgggaactcataggccttctgtggaagttgtatccttt
acgcatgacaaaggatttcaagttcttgctgtaggaattatatcattaaccaataccatg
gggactaccattagtggatgtgttccgcaagatgtgaaacttgtgttagttgaccgtatg
tatgttctatcaggattgaggaatggaatgttacttaggtttgagtggtcttgtaacact
accctgtcctcaacagagccaccttgtgcacaagctgttggttcctggatgatgaactcc
cctgtattatccaattcaatagccccaaatactaagattccagcaatttttatgtccaac
acatctggaaggactaaaggagagttcccagttaatctggagttgattgctgtgcgccgc
attggtattacacctgttttcttggtttcattgagtgattccctggatgctgatatgatt
gctctcagtgacaggccttggttattgcagactgcaagacagagtctgtcttatacatcc
atatcctttcagccttctactcatgtgactcctgtgtgttcaattgaatgcccccgagga
attttatttgttgcggagaacagtcttcatttggtggaaatggtcccaagtaagaggcta
aatgtgcaaaaatttcatattggtggtacaccaaggaagatattatatcacaatgaaagc
aggctgttgctagttatgaggacagaattagacaatgattcgtgctcgtcagatgtttgt
tgtgtggatcctttgagtggctcggtgttgtcatccttcaaatttgatcctggggagacg
gggaaatgtatgcagttggtaaaggtgggaaatgagcatgtgttggtgattggagttagt
caatctgccggaccagctatcatgccaagtggtgaagccgaaagtacaaaaggtcgactg
gtgattctttgccttgatcaaatgcaaaattcagatagttgttcggtccaaagaaattca
cctattggtgggtatggtggagaacagctctccagcagtagtctctgtagcagcccagat
gataatagctgcgatgggattaaacttgaagaaactgaagcatggcacttacgcctagcc
tattctactaattggcctggaatgcccattgctatctgcccttaccttgatcgttatttt
ttggcttctgctggtaattctttttatgtttgtggttttccaaacgataactcccaaagg
gttagaagattggctgttgggagaacacgctttacaataatgactttgagtgtacatttc
acaaggatagctgtcggagattgccgtgatggcattcttttttattcataccatgaggat
tcgcgaaaactggagcaggtttattgtgatcctgtgcaaaggcttgttgctgattgtgtt
cttatggatgttgatactgcctttgtttctgatcggaaaggaagtgttgttgtcttgtct
tgtgcggatcatttagaagataatgcaagcccagaacgcaacttgactctaagctgttca
tattttatgggtgagattgccatgagcatgaggaagggatctttctcatataaactccct
gctgatgatatgatgaagaactatggtactgctagtaatagcaataattcctcaaggaat
tgcatcatggcatctacactgttggggagtatagttatatttattccaattacaagggaa
gagtacgagttactggaagatgttcaagctaggctggtggttgatcctctcactagtcct
attttgggaaatgatcacaatgagtttcgaagccgcgggagtcgggcaggaatacctaag
gtacttgatggagacattctggcccaatttttggagcttacaacgatgcaacaagaggcg
gtgttgacatcaccacaacattcaaacgaggctgtgtcaggtttgaagccatccatgcca
gttatggtcaaccaggttgttcgattgcttgagcgagtacattatgccctgagctaa
DBGET
integrated database retrieval system
